gw1.181.55.1 (Physcomitrella patens)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 gw1.181.55.1 T62412_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.181.55.1 YTH 32 122

Links

Other YTH family RBPs
Other Physcomitrella patens RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.923
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.835
ppa003664m Prunus persica ppa003664m N 0.835
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.835
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.835
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.835
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.824
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.824
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.824
MDP0000287088 Malus x domestica MDP0000287088 N 0.824
MDP0000405927 Malus x domestica MDP0000405927 N 0.824
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
MDP0000617859 Malus x domestica MDP0000617859 N 0.824
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.824
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.824
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.824
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.824
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.824
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.824
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.824
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.813
ppa002588m Prunus persica ppa002588m N 0.813
PK23104.1 Cannabis sativa PK23104.1 N 0.813
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.813
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.813
ppa002483m Prunus persica ppa002483m N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.813
MDP0000248088 Malus x domestica MDP0000248088 N 0.813
SB07G024500 Sorghum bicolor Sb07g024500 N 0.802
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.802
MDP0000286471 Malus x domestica MDP0000286471 N 0.802
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.802
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.802
MDP0000231231 Malus x domestica MDP0000231231 N 0.802
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.802
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
29955.m001158 Ricinus communis 29955.m001158 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.791
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.791
29929.m004643 Ricinus communis 29929.m004643 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.747
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
29890.m000285 Ricinus communis 29890.m000285 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
ppa003557m Prunus persica ppa003557m N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
MDP0000256033 Malus x domestica MDP0000256033 N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703