B9HX84_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0010s16210 T62249_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s16210.1 YTH 428 518

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.956
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.923
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.923
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.901
29889.m003364 Ricinus communis 29889.m003364 N 0.901
ppa018635m Prunus persica ppa018635m N 0.890
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.890
mgf015583m Mimulus guttatus mgf015583m N 0.879
mgf014143m Mimulus guttatus mgf014143m N 0.879
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.868
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.868
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.868
mgf017987m Mimulus guttatus mgf017987m N 0.868
PK02315.1 Cannabis sativa PK02315.1 N 0.857
MDP0000306387 Malus x domestica MDP0000306387 N 0.857
MDP0000132385 Malus x domestica MDP0000132385 N 0.857
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.857
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.846
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.835
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.835
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.835
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.835
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.835
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.835
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.824
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.824
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.791
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.791
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
ppa003664m Prunus persica ppa003664m N 0.791
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
MDP0000171737 Malus x domestica MDP0000171737 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.780
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
MDP0000231231 Malus x domestica MDP0000231231 N 0.780
29955.m001158 Ricinus communis 29955.m001158 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.758
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.758
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
MDP0000199885 Malus x domestica MDP0000199885 N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.747
ppa002588m Prunus persica ppa002588m N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
ppa002483m Prunus persica ppa002483m N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.747
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
mgf014829m Mimulus guttatus mgf014829m N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.736
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.714
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.714
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
mgf009938m Mimulus guttatus mgf009938m N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703