FMR1 (Canis familiaris)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCAFG00000019085 T18481_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.808
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.746
FMR1
M305_0.6 		Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		0.730
FMR1
M304_0.6 		Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		0.730
FMR1
M016_0.6 		Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000028162 KH 220 279
ENSCAFP00000028162 KH 283 334
ENSCAFP00000028164 KH 280 339
ENSCAFP00000028164 KH 343 411

Links

Other KH family RBPs
Other Canis familiaris RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAC59682 Xenopus laevis AAC59682 I 0.777
AAC59683 Xenopus laevis AAC59683 I 0.922
AAEL009326 Aedes aegypti AAEL009326 I 0.710
AAH43638 Xenopus laevis AAH43638 I 0.777
AAH73457 Xenopus laevis AAH73457 I 0.785
AAI12953 Xenopus laevis AAI12953 I 0.930
AAI31885 Xenopus laevis AAI31885 I 0.785
AAI70204 Xenopus laevis AAI70204 I 0.930
AAY79165 Xenopus laevis AAY79165 I 0.785
AAY79166 Xenopus laevis AAY79166 I 0.785
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.725
Ame_R006793 Ailuropoda melanoleuca Ame_R006793 I 0.806
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.754
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.808
CPIJ019402 Culex quinquefasciatus CPIJ019402 I 0.710
CpipJ_CPIJ019402 Culex pipiens CpipJ_CPIJ019402 I 0.710
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.762
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.785
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.851
FXR2 Bos taurus ENSBTAG00000005462 I 0.746
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.940
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.808
FXR1 Canis familiaris ENSCAFG00000011582 I 0.808
FXR2 Canis familiaris ENSCAFG00000016685 I 0.754
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 0.973
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.808
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.746
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.941
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.808
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.746
fxr1 Danio rerio ENSDARG00000022968 I 0.738
fmr1 Danio rerio ENSDARG00000037433 I 0.802
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.731
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.765
FMR1 Dasypus novemcinctus ENSDNOG00000019486 I 0.734
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.765
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.973
LOC100147323 Equus caballus ENSECAG00000007051 I 0.746
FXR1 Equus caballus ENSECAG00000007560 I 0.808
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.800
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.746
FMR1 Echinops telfairi ENSETEG00000006061 I 0.826
FXR1 Echinops telfairi ENSETEG00000006891 I 0.808
FXR2 Echinops telfairi ENSETEG00000018613 I 0.746
FMR1 Felis catus ENSFCAG00000007228 I 0.818
FXR2 Felis catus ENSFCAG00000009620 I 0.746
FMR1 Homo sapiens ENSG00000102081 D 0.974
FXR1 Homo sapiens ENSG00000114416 D 0.808
FXR2 Homo sapiens ENSG00000129245 D 0.746
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.746
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.836
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.800
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.938
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.808
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.991
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.738
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.808
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.948
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.851
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.800
FXR2 Microcebus murinus ENSMICG00000014799 I 0.746
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.715
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.808
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.808
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.746
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.974
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.746
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.815
Fmr1 Mus musculus ENSMUSG00000000838 I 0.974
Fxr2 Mus musculus ENSMUSG00000018765 I 0.746
Fxr1 Mus musculus ENSMUSG00000027680 I 0.800
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.930
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.815
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.746
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.965
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.808
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.884
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.769
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.973
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.738
FMR1 Oryzias latipes ENSORLG00000009094 I 0.847
FXR2 Oryzias latipes ENSORLG00000011571 I 0.767
FXR1 Oryzias latipes ENSORLG00000011787 I 0.738
FMR1 Procavia capensis ENSPCAG00000011936 N 0.932
FXR2 Procavia capensis ENSPCAG00000013184 I 0.738
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.746
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.808
ENSPPYG00000020797 Pongo pygmaeus ENSPPYG00000020797 I 0.874
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.746
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.808
FMR1 Pan troglodytes ENSPTRG00000022349 I 0.974
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.815
FMR1 Pteropus vampyrus ENSPVAG00000013386 I 0.799
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.746
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.746
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.924
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.715
FMR1 Sorex araneus ENSSARG00000003475 N 0.946
FXR1 Sus scrofa ENSSSCG00000011769 I 0.800
FMR1 Sus scrofa ENSSSCG00000012727 I 0.804
FXR2 Sus scrofa ENSSSCG00000017953 I 0.746
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.948
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.746
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.746
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.709
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.792
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.738
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.721
FMR1 Tetraodon nigroviridis ENSTNIG00000010121 N 0.765
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.738
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.765
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.721
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.792
FMR1 Tursiops truncatus ENSTTRG00000000613 I 0.902
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.746
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.808
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.746
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.808
FMR1 Vicugna pacos ENSVPAG00000008700 I 0.799
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.785
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.930
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.725
P51113 Xenopus laevis P51113 I 0.922
P51115 Xenopus laevis P51115 I 0.785
PHUM440700 Pediculus humanus PHUM440700 I 0.710
Q2KHP9 Xenopus laevis Q2KHP9 I 0.930
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.777