CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Taeniopygia guttata
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTGUG00000006841
T19577_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.749
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.749
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.749
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.749
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000007113
KH
61
123
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSTGUP00000007113
KH
146
210
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSTGUP00000007113
KH
236
298
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSTGUP00000007113
KH
337
408
EFNFIVPTGKTGLIIGKGNISYLCGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Taeniopygia guttata
RBPs
104 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCAFG00000023462
Canis familiaris
ENSCAFG00000023462
N
0.000
ENSCHOG00000001614
Choloepus hoffmanni
ENSCHOG00000001614
N
0.000
LOC100392844
Callithrix jacchus
ENSCJAG00000019154
N
0.000
HNRNPH1
Dasypus novemcinctus
ENSDNOG00000007173
N
0.000
ENSDORG00000008260
Dipodomys ordii
ENSDORG00000008260
N
0.000
Hnrnph3
Dipodomys ordii
ENSDORG00000011470
N
0.000
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.000
HNRNPH1
Tetraodon nigroviridis
ENSTNIG00000008997
N
0.000