MDP0000313902 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000313902 T25203_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000313902 PUF 686 720
MDP0000313902 PUF 722 756
MDP0000313902 PUF 758 792
MDP0000313902 PUF 794 828
MDP0000313902 PUF 830 864
MDP0000313902 PUF 867 901
MDP0000313902 PUF 903 937
MDP0000313902 PUF 994 1023

Links

Other PUF family RBPs
Other Malus x domestica RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.821
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.746
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.740
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.723
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.745
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.811
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.806
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.711
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.705
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.708
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.705
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.722
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.721
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.762
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.737
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.751
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.740
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.736
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.824
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.777
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.726
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.740
MDP0000265231 Malus x domestica MDP0000265231 N 0.777
MDP0000277305 Malus x domestica MDP0000277305 N 0.921
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.726
mgf002285m Mimulus guttatus mgf002285m N 0.708
mgf006786m Mimulus guttatus mgf006786m N 0.786
PK11972.1 Cannabis sativa PK11972.1 N 0.754
PK12245.1 Cannabis sativa PK12245.1 N 0.759
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.793
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.730
ppa000898m Prunus persica ppa000898m N 0.780
ppa016404m Prunus persica ppa016404m N 0.868
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.733