BRADI3G53240 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI3G53240 T33264_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G53240.1 RRM 39 105
BRADI3G53240.2 RRM 39 105

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.701
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.926
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.721
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
CU179634_3 Medicago truncatula CU179634_3 I 0.761
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.765
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.746
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.761
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.701
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.706
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.897
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.897
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.735
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.735
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.926
MDP0000138486 Malus x domestica MDP0000138486 I 0.776
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
MDP0000488395 Malus x domestica MDP0000488395 I 0.706
MDP0000548950 Malus x domestica MDP0000548950 I 0.706
MDP0000744398 Malus x domestica MDP0000744398 I 0.706
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.706
mgf017214m Mimulus guttatus mgf017214m I 0.779
PK21213.1 Cannabis sativa PK21213.1 I 0.776
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
ppa009716m Prunus persica ppa009716m I 0.706
ppa009964m Prunus persica ppa009964m I 0.750
SB04G030020 Sorghum bicolor Sb04g030020 I 0.882
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.701