CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000024611
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000024611
T39772_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000023086
RRM
86
156
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSOCUP00000023086
RRM
180
249
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSOCUP00000023086
RRM
583
651
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
75 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI08588
Xenopus laevis
AAI08588
N
0.735
AAI34826
Xenopus laevis
AAI34826
N
0.862
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.773
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
1.000
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.758
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.773
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
1.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.773
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
1.000
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
1.000
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.768
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.995
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.726
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.995
myef2
Danio rerio
ENSDARG00000059398
N
0.720
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.929
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.768
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.773
HNRNPM
Equus caballus
ENSECAG00000023868
N
1.000
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
1.000
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.896
HNRNPM
Homo sapiens
ENSG00000099783
N
1.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.773
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.815
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.735
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.957
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.773
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
1.000
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.768
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.777
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
1.000
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.919
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.943
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.773
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.976
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.995
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
1.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.773
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.716
ENSMODG00000003473
Monodelphis domestica
ENSMODG00000003473
N
0.714
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.990
Myef2
Mus musculus
ENSMUSG00000027201
N
0.773
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.995
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
1.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.773
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.886
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.711
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.943
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.725
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.806
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.981
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.773
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.773
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
1.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.773
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
1.000
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.777
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
1.000
ENSRNOG00000024645
Rattus norvegicus
ENSRNOG00000024645
N
0.857
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.967
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.763
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
1.000
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.929
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.981
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.768
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.736
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.777
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.787
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.720
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.711
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.773
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
1.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.773
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.805
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.744