CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM263440
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM263440
T45337_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
sf3b4
M195_0.6
Danio rerio
CAAAAG
RNAcompete
Ray et al.(2013)
RNCMPT00224
0.868
Smp_067420
M201_0.6
Schistosoma mansoni
DWWUUUU
RNAcompete
Ray et al.(2013)
RNCMPT00232
0.846
sap-49
M261_0.6
Caenorhabditis elegans
CGUGUGAG
SELEX
Cook et al.(2011)
145_9163526
0.818
estExt_gwp_gw1.C_700168
M205_0.6
Physcomitrella patens
WUGGAG
RNAcompete
Ray et al.(2013)
RNCMPT00237
0.762
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM263440-PA
RRM
15
85
IYVGGLDDKVTEPLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIR
PHUM263440-PA
RRM
102
173
IFIGNLDPEVDEKLLFDTFSAFGVILQTPKIMRDPDSGNSKGFAFINFASFDASDASIEAMNGQYLCNRPIS
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
124 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30183.m001303
Ricinus communis
30183.m001303
I
0.783
99199
Helobdella robusta
99199
I
0.860
AAEL013795
Aedes aegypti
AAEL013795
I
0.909
AAH45264
Xenopus laevis
AAH45264
I
0.874
AAH77458
Xenopus laevis
AAH77458
I
0.874
AGAP001538
Anopheles gambiae
AGAP001538
I
0.923
AMAG_03157
Allomyces macrogynus
AMAG_03157
I
0.727
AMAG_10429
Allomyces macrogynus
AMAG_10429
I
0.727
amel4_ncbi_hmm1889
Apis mellifera
amel4_ncbi_hmm1889
I
0.972
Ame_R019118
Ailuropoda melanoleuca
Ame_R019118
I
0.881
Aqu1.212443
Amphimedon queenslandica
Aqu1.212443
I
0.825
Aqu1.214461
Amphimedon queenslandica
Aqu1.214461
I
0.825
emb2444
Arabidopsis thaliana
AT2G18510-TAIR-G
I
0.727
BGIOSIBCE032328
Oryza indica
BGIOSIBCE032328
I
0.748
Bm1_43460
Brugia malayi
Bm1_43460
I
0.811
BRADI3G27920
Brachypodium distachyon
BRADI3G27920
I
0.748
sap-49
Caenorhabditis elegans
C08B11.5
D
0.818
CAOG_06059
Capsaspora owczarzaki
CAOG_06059
I
0.734
cassava31033.valid.m1
Manihot esculenta
cassava31033.valid.m1
I
0.783
CBG13349
Caenorhabditis briggsae
CBG13349
I
0.811
CBN06124
Caenorhabditis brenneri
CBN06124
I
0.818
CJA19238
Caenorhabditis japonica
CJA19238
I
0.818
CPIJ014149
Culex quinquefasciatus
CPIJ014149
I
0.909
CpipJ_CPIJ014149
Culex pipiens
CpipJ_CPIJ014149
I
0.909
CRE01639
Caenorhabditis remanei
CRE01639
I
0.818
Cucsa.251850
Cucumis sativus
Cucsa.251850
I
0.769
DGIL_AUG5s13542g6t1
Acyrtosiphon pisum
DGIL_AUG5s13542g6t1
I
0.867
ENSACAG00000010019
Anolis carolinensis
ENSACAG00000010019
I
0.881
Q3MHE6_BOVIN
Bos taurus
ENSBTAG00000012495
I
0.881
ENSBTAG00000012793
Bos taurus
ENSBTAG00000012793
I
0.867
ENSBTAG00000026365
Bos taurus
ENSBTAG00000026365
I
0.701
ENSCAFG00000005753
Canis familiaris
ENSCAFG00000005753
I
0.825
ENSCAFG00000011617
Canis familiaris
ENSCAFG00000011617
I
0.881
A6MKC5_CALJA
Callithrix jacchus
ENSCJAG00000000793
I
0.881
ENSCPOG00000008267
Cavia porcellus
ENSCPOG00000008267
I
0.881
sf3b4
Danio rerio
ENSDARG00000018574
D
0.881
LOC100054350
Equus caballus
ENSECAG00000024737
I
0.881
ENSFCAG00000010106
Felis catus
ENSFCAG00000010106
I
0.881
SF3B4
Homo sapiens
ENSG00000143368
I
0.881
SF3B4
Gasterosteus aculeatus
ENSGACG00000003819
I
0.881
SF3B4
Gallus gallus
ENSGALG00000013352
I
0.881
SF3B4
Gorilla gorilla
ENSGGOG00000004761
I
0.881
ENSLAFG00000008531
Loxodonta africana
ENSLAFG00000008531
I
0.881
ENSMEUG00000003272
Macropus eugenii
ENSMEUG00000003272
I
0.825
ENSMGAG00000000653
Meleagris gallopavo
ENSMGAG00000000653
I
0.881
SF3B4
Microcebus murinus
ENSMICG00000000296
I
0.881
ENSMLUG00000010789
Myotis lucifugus
ENSMLUG00000010789
I
0.881
SF3B4
Macaca mulatta
ENSMMUG00000007256
I
0.881
ENSMODG00000018767
Monodelphis domestica
ENSMODG00000018767
I
0.881
Sf3b4
Mus musculus
ENSMUSG00000068856
I
0.881
ENSOCUG00000004614
Oryctolagus cuniculus
ENSOCUG00000004614
I
0.881
SF3B4
Otolemur garnettii
ENSOGAG00000006265
I
0.881
ENSOPRG00000010808
Ochotona princeps
ENSOPRG00000010808
I
0.881
SF3B4
Oryzias latipes
ENSORLG00000003062
I
0.881
ENSPCAG00000000392
Procavia capensis
ENSPCAG00000000392
I
0.874
SF3B4
Pan troglodytes
ENSPTRG00000001243
I
0.881
ENSPVAG00000014171
Pteropus vampyrus
ENSPVAG00000014171
I
0.881
Sf3b4
Rattus norvegicus
ENSRNOG00000021181
I
0.881
ENSSSCG00000006665
Sus scrofa
ENSSSCG00000006665
I
0.881
ENSSTOG00000006570
Spermophilus tridecemlineatus
ENSSTOG00000006570
I
0.848
SF3B4
Taeniopygia guttata
ENSTGUG00000004470
I
0.881
SF3B4
Tetraodon nigroviridis
ENSTNIG00000009156
I
0.881
SF3B4
Takifugu rubripes
ENSTRUG00000004516
I
0.881
SF3B4
Tarsius syrichta
ENSTSYG00000009295
I
0.881
ENSTTRG00000005217
Tursiops truncatus
ENSTTRG00000005217
I
0.881
ENSVPAG00000008152
Vicugna pacos
ENSVPAG00000008152
I
0.881
sf3b4
Xenopus tropicalis
ENSXETG00000011038
I
0.881
estExtDG_fgenesh_newKGs_kg.C_520059
Emiliania huxleyi
estExtDG_fgenesh_newKGs_kg.C_520059
I
0.720
estExt_fgenesh1_pg.C_220114
Monosiga brevicollis
estExt_fgenesh1_pg.C_220114
I
0.755
estExt_fgenesh2_pm.C_9540001
Branchiostoma floridae
estExt_fgenesh2_pm.C_9540001
I
0.881
estExt_Genemark1.C_60101
Coccomyxa C 169
estExt_Genemark1.C_60101
I
0.748
estExt_Genewise1.C_230076
Capitella teleta
estExt_Genewise1.C_230076
I
0.881
estExt_Genewise1.C_60440
Chlorella vulgaris
estExt_Genewise1.C_60440
I
0.748
estExt_Genewise1.C_sca_2060028
Lottia gigantea
estExt_Genewise1.C_sca_2060028
I
0.909
estExt_gwp.C_590193
Nematostella vectensis
estExt_gwp.C_590193
I
0.881
estExt_gwp_gw1.C_700168
Physcomitrella patens
estExt_gwp_gw1.C_700168
D
0.762
e_gw1.1.857.1
Daphnia pulex
e_gw1.1.857.1
I
0.888
e_gw1.3.432.1
Micromonas pusilla
e_gw1.3.432.1
I
0.734
e_gw1.6.938.1
Trichoplax adhaerens
e_gw1.6.938.1
I
0.839
e_gwEuk.5.259.1
Ostreococcus lucimarinus
e_gwEuk.5.259.1
I
0.706
Spx
Drosophila melanogaster
FBgn0015818
I
0.874
GA17684-RA
Drosophila pseudoobscura
FBgn0077694
I
0.881
GF20385
Drosophila ananassae
FBgn0097392
I
0.881
GG19577
Drosophila erecta
FBgn0111779
I
0.881
GH17589
Drosophila grimshawi
FBgn0125059
I
0.888
GI16317
Drosophila mojavensis
FBgn0139065
I
0.888
GL21313
Drosophila persimilis
FBgn0158906
I
0.881
GM12470
Drosophila sechellia
FBgn0167407
I
0.874
GJ15655
Drosophila virilis
FBgn0202845
I
0.888
GK19717
Drosophila willistoni
FBgn0221715
I
0.881
GE16738
Drosophila yakuba
FBgn0234234
I
0.881
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.755
XM_002886132.1
Arabidopsis lyrata
fgenesh2_kg.3__3460__AT2G18510.1
I
0.720
fgenesh2_pg.scaffold_36000101
Branchiostoma floridae
fgenesh2_pg.scaffold_36000101
I
0.881
Glyma09g00310.1
Glycine max
Glyma09g00310.1
I
0.762
Glyma12g36950.1
Glycine max
Glyma12g36950.1
I
0.755
GRMZM2G102639
Zea mays
GRMZM2G102639
I
0.741
GRMZM2G170699
Zea mays
GRMZM2G170699
I
0.748
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.769
gw1.05.00.253.1
Ostreococcus tauri
gw1.05.00.253.1
I
0.713
gw1.3.260.1
Chlorella NC64A
gw1.3.260.1
I
0.727
gw1.5.900.1
Ostreococcus RCC809
gw1.5.900.1
I
0.706
ISCW010601
Ixodes scapularis
ISCW010601
I
0.881
LOAG_01189
Loa loa
LOAG_01189
I
0.818
LOC_Os10g31900
Oryza sativa
LOC_Os10g31900
I
0.748
MDP0000131129
Malus x domestica
MDP0000131129
I
0.769
MDP0000320945
Malus x domestica
MDP0000320945
I
0.769
Medtr3g087340
Medicago truncatula
Medtr3g087340
I
0.762
Minc01580
Meloidogyne incognita
Minc01580
I
0.797
Minc02568
Meloidogyne incognita
Minc02568
I
0.797
Minc12926
Meloidogyne incognita
Minc12926
I
0.797
nasonia_NCBI_hmm192414
Nasonia vitripennis
nasonia_NCBI_hmm192414
I
0.958
PK08238.1
Cannabis sativa
PK08238.1
I
0.776
B9HEU6_POPTR
Populus trichocarpa
POPTR_0007s12570
I
0.769
ppa007508m
Prunus persica
ppa007508m
I
0.755
PTSG_00878
Salpingoeca rosetta
PTSG_00878
I
0.790
SB01G020190
Sorghum bicolor
Sb01g020190
I
0.748
Smp_067420
Schistosoma mansoni
Smp_067420
D
0.846
SNAPOd2T00022637001
Oikopleura dioica
SNAPOd2T00022637001
I
0.818
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.748
WUBG_01785
Wuchereria bancrofti
WUBG_01785
I
0.818
XP_001185838.1
Strongylocentrotus purpuratus
XP_001185838.1
I
0.853
XP_002157695.1
Hydra magnipapillata
XP_002157695.1
I
0.832
XP_784135.2
Strongylocentrotus purpuratus
XP_784135.2
I
0.853