SFPQ (Tupaia belangeri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTBEG00000006238 T41729_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.940
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.940
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.735
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000005385 RRM 290 354
ENSTBEP00000005385 RRM 364 430

Links

Other RRM family RBPs
Other Tupaia belangeri RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SFPQ Homo sapiens ENSG00000116560 D 0.940
NONO Homo sapiens ENSG00000147140 D 0.735
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.720
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.773
NONO Procavia capensis ENSPCAG00000002541 I 0.735
SFPQ Procavia capensis ENSPCAG00000006164 I 0.940
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.940
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.720
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.735
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.940
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.720
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.735
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.940
NONO Otolemur garnettii ENSOGAG00000004834 I 0.735
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.735
NONO Monodelphis domestica ENSMODG00000004445 I 0.727
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.720
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.917
Pspc1 Mus musculus ENSMUSG00000021938 I 0.720
Sfpq Mus musculus ENSMUSG00000028820 I 0.940
Nono Mus musculus ENSMUSG00000031311 I 0.735
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.910
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.940
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.720
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.735
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.865
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.712
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.833
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.833
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.894
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.727
NONO Tursiops truncatus ENSTTRG00000009605 I 0.735
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.940
NONO Vicugna pacos ENSVPAG00000002272 I 0.735
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.940
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.848
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.940
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.720
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.742
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.720
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.735
Nono Rattus norvegicus ENSRNOG00000003689 I 0.735
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.940
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.720
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.720
PSPC1 Sorex araneus ENSSARG00000000888 I 0.720
NONO Sorex araneus ENSSARG00000007959 I 0.727
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.727
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.940
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.722
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.909
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.735
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.742
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.720
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.735
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.788
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.720
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.735
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.940
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.727
sfpq Danio rerio ENSDARG00000011564 I 0.780
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.925
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.727
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.720
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.940
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.729
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.917
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.727
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.735
SFPQ Bos taurus ENSBTAG00000016328 I 0.940
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.735
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.940
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.735
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.856
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.910
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.720
LOC100069588 Equus caballus ENSECAG00000000642 I 0.940
NONO Equus caballus ENSECAG00000008502 I 0.735
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.940
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.720
NONO Macropus eugenii ENSMEUG00000004294 I 0.722
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.917
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.720
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.720
NONO Microcebus murinus ENSMICG00000000232 I 0.735
SFPQ Microcebus murinus ENSMICG00000011755 I 0.940
NONO Myotis lucifugus ENSMLUG00000002489 I 0.712
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.720
NONO Loxodonta africana ENSLAFG00000013422 I 0.735
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.720
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.940
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.720
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.735
SFPQ Echinops telfairi ENSETEG00000001095 I 0.940
PSPC1 Homo sapiens ENSG00000121390 I 0.720
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.789
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.909
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.720
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.742
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.735
NONO Gorilla gorilla ENSGGOG00000006194 I 0.735
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.788