e_gw1.1.857.1 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.1.857.1 T49833_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.889
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.874
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.797
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.1.857.1 RRM 15 85
e_gw1.1.857.1 RRM 102 173

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sf3b4 Danio rerio ENSDARG00000018574 D 0.902
sap-49 Caenorhabditis elegans C08B11.5 D 0.797
Smp_067420 Schistosoma mansoni Smp_067420 D 0.874
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.790
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.783
SB01G020190 Sorghum bicolor Sb01g020190 I 0.769
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.846
30183.m001303 Ricinus communis 30183.m001303 I 0.797
99199 Helobdella robusta 99199 I 0.867
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.811
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.811
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.790
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.797
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.706
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.881
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.713
PHUM263440 Pediculus humanus PHUM263440 I 0.888
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.769
Spx Drosophila melanogaster FBgn0015818 I 0.860
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.867
GF20385 Drosophila ananassae FBgn0097392 I 0.867
GG19577 Drosophila erecta FBgn0111779 I 0.867
GH17589 Drosophila grimshawi FBgn0125059 I 0.874
GI16317 Drosophila mojavensis FBgn0139065 I 0.874
GL21313 Drosophila persimilis FBgn0158906 I 0.867
GM12470 Drosophila sechellia FBgn0167407 I 0.860
GJ15655 Drosophila virilis FBgn0202845 I 0.874
GK19717 Drosophila willistoni FBgn0221715 I 0.867
GE16738 Drosophila yakuba FBgn0234234 I 0.867
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.748
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.783
ISCW010601 Ixodes scapularis ISCW010601 I 0.888
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.902
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.748
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.762
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.706
MDP0000131129 Malus x domestica MDP0000131129 I 0.783
MDP0000320945 Malus x domestica MDP0000320945 I 0.783
Minc01580 Meloidogyne incognita Minc01580 I 0.804
Minc02568 Meloidogyne incognita Minc02568 I 0.804
Minc12926 Meloidogyne incognita Minc12926 I 0.804
ppa007508m Prunus persica ppa007508m I 0.776
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.832
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.839
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.832
AAH45264 Xenopus laevis AAH45264 I 0.895
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.762
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.902
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.769
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.888
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.853
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.895
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.888
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.741
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.888
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.769
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.769
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.713
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.706
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.762
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.769
AAH77458 Xenopus laevis AAH77458 I 0.895
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.902
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.727
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.769
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.769
CBG13349 Caenorhabditis briggsae CBG13349 I 0.783
CBN06124 Caenorhabditis brenneri CBN06124 I 0.797
CJA19238 Caenorhabditis japonica CJA19238 I 0.811
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.881
CRE01639 Caenorhabditis remanei CRE01639 I 0.797
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.902
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.902
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.881
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.729
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.839
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.902
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.755
AGAP001538 Anopheles gambiae AGAP001538 I 0.888
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.727
Bm1_43460 Brugia malayi Bm1_43460 I 0.811
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.881
LOAG_01189 Loa loa LOAG_01189 I 0.818
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.790
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.734
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.818
PK08238.1 Cannabis sativa PK08238.1 I 0.790
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.895
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.860
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.895
AAEL013795 Aedes aegypti AAEL013795 I 0.881
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.902
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.902
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.902
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.902
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.902
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.895
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.902
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.902
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.902
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.902
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.869
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.902
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.902
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.902
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.902
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.902
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.902
LOC100054350 Equus caballus ENSECAG00000024737 I 0.902
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.902
SF3B4 Homo sapiens ENSG00000143368 I 0.902
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.902
SF3B4 Gallus gallus ENSGALG00000013352 I 0.902
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.902
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.902
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.839
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.902
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.902
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.902
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.902
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.902
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.902