Medtr3g013160 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g013160 T54458_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g013160.1 RRM 292 318
Medtr3g013160.1 RRM 323 367
Medtr3g013160.1 RRM 412 482
Medtr3g013160.1 RRM 546 610
Medtr3g013160.2 RRM 290 316
Medtr3g013160.2 RRM 321 365
Medtr3g013160.2 RRM 410 480
Medtr3g013160.2 RRM 544 608
Medtr3g013160.3 RRM 292 318
Medtr3g013160.3 RRM 323 367
Medtr3g013160.3 RRM 412 482

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006486m Prunus persica ppa006486m N 0.774
mgf007385m Mimulus guttatus mgf007385m N 0.851
mgf004253m Mimulus guttatus mgf004253m N 0.851
mgf002992m Mimulus guttatus mgf002992m N 0.909
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.731
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.907
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.906
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.742
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.745
e_gwW.23.55.1 Chlamydomonas reinhardtii e_gwW.23.55.1 N 0.713
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.707
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.750
mgf009246m Mimulus guttatus mgf009246m N 0.716
mgf010551m Mimulus guttatus mgf010551m N 0.841
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.867
MDP0000306572 Malus x domestica MDP0000306572 N 0.889
MDP0000288579 Malus x domestica MDP0000288579 N 0.755
MDP0000194332 Malus x domestica MDP0000194332 N 0.899
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.726
chr3.CM0129.190.nd Lotus japonicus chr3.CM0129.190.nd N 0.909
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.934
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.904
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.904
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.881
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.895
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.740
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.880
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.870
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.888
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.856
GSVIVG00007437001 Vitis vinifera GSVIVG00007437001 N 0.832
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.851
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.870
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.853
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.902
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.827
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.822
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.923
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.865
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.822
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.768
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.885
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.870
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.870
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.870
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.870
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.880
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.880
29646.m001075 Ricinus communis 29646.m001075 N 0.937
SB05G026786 Sorghum bicolor Sb05g026786 N 0.839
SB05G026740 Sorghum bicolor Sb05g026740 N 0.803
Sb05g025260 Sorghum bicolor Sb05g025260 N 0.881
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.875
PK22404.1 Cannabis sativa PK22404.1 N 0.930