CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gww2.12.213.1
(
Phanerochaete chrysosporium
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
e_gww2.12.213.1
T61063_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.816
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gww2.12.213.1
S1
8
83
YPEVDELVMVQVRQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGRNEVVVVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Phanerochaete chrysosporium
RBPs
267 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EIF4B
Homo sapiens
ENSG00000063046
D
0.000
EIF4B
Anolis carolinensis
ENSACAG00000011869
I
0.000
EIF4B
Ornithorhynchus anatinus
ENSOANG00000009940
I
0.000
EIF4B
Oryctolagus cuniculus
ENSOCUG00000013484
I
0.000
EIF4B
Ochotona princeps
ENSOPRG00000008447
I
0.000
EIF4B
Oryzias latipes
ENSORLG00000016502
I
0.000
ENSPPYG00000025848
Pongo pygmaeus
ENSPPYG00000025848
I
0.000
XR_020585.1
Pan troglodytes
ENSPTRG00000004997
I
0.000
EIF4B
Pteropus vampyrus
ENSPVAG00000009362
I
0.000
Eif4b
Rattus norvegicus
ENSRNOG00000010103
I
0.000
EIF4B
Sorex araneus
ENSSARG00000000838
I
0.000
EIF4B
Spermophilus tridecemlineatus
ENSSTOG00000006800
I
0.000
EIF4B
Tupaia belangeri
ENSTBEG00000005423
I
0.000
EIF4B
Taeniopygia guttata
ENSTGUG00000003829
I
0.000
EIF4B
Tetraodon nigroviridis
ENSTNIG00000007192
I
0.000
EIF4B
Tarsius syrichta
ENSTSYG00000012880
I
0.000
EIF4B
Tursiops truncatus
ENSTTRG00000002770
I
0.000
EIF4B
Vicugna pacos
ENSVPAG00000007999
I
0.000
Eif4b
Mus musculus
ENSMUSG00000058655
I
0.000
eif4b
Xenopus tropicalis
ENSXETG00000001829
I
0.000
eif4ba
Danio rerio
ENSDARG00000017439
I
0.000
eif4bb
Danio rerio
ENSDARG00000010194
I
0.000
ENSCPOG00000021782
Cavia porcellus
ENSCPOG00000021782
I
0.000
ENSCPOG00000005595
Cavia porcellus
ENSCPOG00000005595
I
0.000
EIF4B
Callithrix jacchus
ENSCJAG00000018176
I
0.000
EIF4B
Choloepus hoffmanni
ENSCHOG00000001608
I
0.000
EIF4B
Canis familiaris
ENSCAFG00000007117
I
0.000
Q3MHP6_BOVIN
Bos taurus
ENSBTAG00000006883
I
0.000
EIF4B
Equus caballus
ENSECAG00000024091
I
0.000
ENSGGOG00000013695
Gorilla gorilla
ENSGGOG00000013695
I
0.000
ENSMMUG00000001062
Macaca mulatta
ENSMMUG00000001062
I
0.000
EIF4B
Gasterosteus aculeatus
ENSGACG00000008010
I
0.000
ENSGGOG00000004382
Gorilla gorilla
ENSGGOG00000004382
I
0.000
EIF4B
Meleagris gallopavo
ENSMGAG00000005127
I
0.000
ENSLAFG00000009534
Loxodonta africana
ENSLAFG00000009534
I
0.000
EIF4B
Myotis lucifugus
ENSMLUG00000013021
N
0.000
EIF4B
Felis catus
ENSFCAG00000000300
N
0.000
EIF4B
Procavia capensis
ENSPCAG00000001759
N
0.000
D3ZIS8_RAT
Rattus norvegicus
ENSRNOG00000039259
N
0.000
ENSMMUG00000008391
Macaca mulatta
ENSMMUG00000008391
N
0.000