fubp1 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000029248 T18623_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.716
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.716
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.716
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000075883 KH 91 153
ENSDARP00000075883 KH 176 240
ENSDARP00000075883 KH 269 331
ENSDARP00000075883 KH 376 441

Links

Other KH family RBPs
Other Danio rerio RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.760
AAH44277 Xenopus laevis AAH44277 I 0.868
AAH60400 Xenopus laevis AAH60400 N 0.760
AAH70981 Xenopus laevis AAH70981 I 0.868
AAI61696 Xenopus laevis AAI61696 I 0.724
AAI69815 Xenopus laevis AAI69815 I 0.868
AAI69923 Xenopus laevis AAI69923 I 0.716
AAN77160 Xenopus laevis AAN77160 I 0.716
AAN77161 Xenopus laevis AAN77161 I 0.848
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.764
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.849
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.716
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.744
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.915
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.926
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.856
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.716
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.764
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.852
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.852
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.934
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.856
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.767
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.852
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.852
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.844
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.724
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.852
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.856
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.852
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.815
Fubp1 Mus musculus ENSMUSG00000028034 I 0.848
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.856
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.848
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.883
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.852
FUBP1 Equus caballus ENSECAG00000010867 I 0.852
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.860
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.852
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.852
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.852
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.852
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.852
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.848
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.852
FUBP1 Homo sapiens ENSG00000162613 I 0.856
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.852
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.833
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.736
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.721
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.760
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.756
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.767
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.717
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.736
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.725
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.709
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.764
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.764
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.764
FUBP3 Homo sapiens ENSG00000107164 N 0.764
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.740
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.760
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.744
FUBP3 Felis catus ENSFCAG00000005113 N 0.752
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.760
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.717
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.764
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.760
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.717
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.764
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.748
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.767
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.764
Fubp3 Mus musculus ENSMUSG00000026843 N 0.760
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.756
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.716
KHSRP Felis catus ENSFCAG00000003731 I 0.716
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.716
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.712
KHSRP Danio rerio ENSDARG00000026489 I 0.708
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.716
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.716
KHSRP Canis familiaris ENSCAFG00000018667 I 0.716
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.720
KHSRP Homo sapiens ENSG00000088247 D 0.716
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.716
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.716
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.716
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.716
KHSRP Microcebus murinus ENSMICG00000007863 I 0.708
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.716
Khsrp Mus musculus ENSMUSG00000007670 I 0.716
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.716
KHSRP Sus scrofa ENSSSCG00000013538 I 0.716
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.720
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.712
LOC100065608 Equus caballus ENSECAG00000018305 I 0.716
LOC100069755 Equus caballus ENSECAG00000011500 N 0.740
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.767
LOC505564 Bos taurus ENSBTAG00000021018 I 0.716
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.852
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.846
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.760