cassava2135.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava2135.valid.m1 T49173_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava2135.valid.m1 RRM 24 94
cassava2135.valid.m1 RRM 117 188
cassava2135.valid.m1 RRM 234 298

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006434 Ricinus communis 30169.m006434 I 0.942
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.803
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.918
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.793
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.702
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.702
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.702
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.702
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.702
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.702
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.928
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.755
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.736
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.707
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.822
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.803
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.702
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.861
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.817
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.913
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.721
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.764
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.764
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.779
MDP0000123012 Malus x domestica MDP0000123012 N 0.774
MDP0000123414 Malus x domestica MDP0000123414 N 0.764
MDP0000276227 Malus x domestica MDP0000276227 I 0.865
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.837
mgf023806m Mimulus guttatus mgf023806m I 0.788
PK28027.1 Cannabis sativa PK28027.1 I 0.899
ppa005940m Prunus persica ppa005940m I 0.865
SB01G045570 Sorghum bicolor Sb01g045570 I 0.827
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.803