Glyma18g49580.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma18g49580.1 T52917_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.820
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma18g49580.1 RRM 19 76
Glyma18g49580.1 RRM 116 180
Glyma18g49580.1 RRM 248 310

Links

Other RRM family RBPs
Other Glycine max RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.887
30169.m006527 Ricinus communis 30169.m006527 I 0.787
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.877
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.766
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.856
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.818
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.845
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.743
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.802
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.777
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.904
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.777
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.777
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.935
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.782
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.823
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.820
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.787
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.793
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.963
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.777
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.798
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.761
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.807
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.904
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.777
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.820
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.763
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.866
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.824
MDP0000269393 Malus x domestica MDP0000269393 I 0.750
MDP0000796160 Malus x domestica MDP0000796160 I 0.888
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.778
mgf001230m Mimulus guttatus mgf001230m I 0.730
mgf005649m Mimulus guttatus mgf005649m I 0.735
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.804
PK14390.1 Cannabis sativa PK14390.1 I 0.904
ppa004961m Prunus persica ppa004961m I 0.904
ppa005791m Prunus persica ppa005791m I 0.782
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.840
SB01G034060 Sorghum bicolor Sb01g034060 I 0.824
SB03G028150 Sorghum bicolor Sb03g028150 I 0.759
SB07G021250 Sorghum bicolor Sb07g021250 I 0.807
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.761
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.840