chr1.CM0141.270.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0141.270.nc T55796_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0141.270.nc RRM 19 76
chr1.CM0141.270.nc RRM 116 180
chr1.CM0141.270.nc RRM 248 310

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.887
30169.m006527 Ricinus communis 30169.m006527 I 0.787
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.866
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.777
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.856
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.813
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.856
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.727
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.824
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.777
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.893
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.782
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.782
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.787
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.828
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.815
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.793
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.798
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.930
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.777
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.798
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.935
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.745
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.818
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.893
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.787
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.815
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.747
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.861
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.834
MDP0000269393 Malus x domestica MDP0000269393 I 0.761
MDP0000796160 Malus x domestica MDP0000796160 I 0.888
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.778
mgf001230m Mimulus guttatus mgf001230m I 0.762
mgf005649m Mimulus guttatus mgf005649m I 0.762
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.804
PK14390.1 Cannabis sativa PK14390.1 I 0.888
ppa004961m Prunus persica ppa004961m I 0.904
ppa005791m Prunus persica ppa005791m I 0.793
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.835
SB01G034060 Sorghum bicolor Sb01g034060 I 0.846
SB03G028150 Sorghum bicolor Sb03g028150 I 0.749
SB07G021250 Sorghum bicolor Sb07g021250 I 0.818
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.766
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.834