MDP0000320945 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000320945 T57647_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.951
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.785
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.762
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.762
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000320945 RRM 396 466
MDP0000320945 RRM 483 554

Links

Other RRM family RBPs
Other Malus x domestica RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.951
59062 Aureococcus anophagefferens 59062 I 0.748
99199 Helobdella robusta 99199 I 0.755
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.797
AAEL013795 Aedes aegypti AAEL013795 I 0.790
AAH45264 Xenopus laevis AAH45264 I 0.804
AAH77458 Xenopus laevis AAH77458 I 0.804
AGAP001538 Anopheles gambiae AGAP001538 I 0.776
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.713
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.713
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.776
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.797
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.727
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.727
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.979
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.930
Bm1_43460 Brugia malayi Bm1_43460 I 0.734
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.916
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.734
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.979
CBG13349 Caenorhabditis briggsae CBG13349 I 0.748
CBN06124 Caenorhabditis brenneri CBN06124 I 0.762
CJA19238 Caenorhabditis japonica CJA19238 I 0.748
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.790
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.790
CRE01639 Caenorhabditis remanei CRE01639 I 0.762
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.986
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.783
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.902
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.797
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.783
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.748
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.797
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.797
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.797
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.797
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.741
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.797
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.797
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.797
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.797
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.797
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.790
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.797
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.797
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.772
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.797
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.797
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.762
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.790
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.825
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.769
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.825
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.790
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.727
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.713
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.790
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.951
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.783
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.825
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.755
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.804
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.867
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.790
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.776
GE16738 Drosophila yakuba FBgn0234234 I 0.776
GF20385 Drosophila ananassae FBgn0097392 I 0.776
GG19577 Drosophila erecta FBgn0111779 I 0.776
GH17589 Drosophila grimshawi FBgn0125059 I 0.783
GI16317 Drosophila mojavensis FBgn0139065 I 0.783
GJ15655 Drosophila virilis FBgn0202845 I 0.783
GK19717 Drosophila willistoni FBgn0221715 I 0.776
GL21313 Drosophila persimilis FBgn0158906 I 0.776
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.972
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.958
GM12470 Drosophila sechellia FBgn0167407 I 0.769
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.923
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.923
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.986
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.804
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.818
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.790
ISCW010601 Ixodes scapularis ISCW010601 I 0.804
LOAG_01189 Loa loa LOAG_01189 I 0.741
LOC100054350 Equus caballus ENSECAG00000024737 I 0.797
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.930
MDP0000131129 Malus x domestica MDP0000131129 I 1.000
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.972
Minc01580 Meloidogyne incognita Minc01580 I 0.706
Minc02568 Meloidogyne incognita Minc02568 I 0.706
Minc12926 Meloidogyne incognita Minc12926 I 0.706
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.790
PHUM263440 Pediculus humanus PHUM263440 I 0.769
PK08238.1 Cannabis sativa PK08238.1 I 0.993
ppa007508m Prunus persica ppa007508m I 0.986
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.748
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.797
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.720
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.720
sap-49 Caenorhabditis elegans C08B11.5 D 0.762
SB01G020190 Sorghum bicolor Sb01g020190 I 0.930
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.797
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.797
SF3B4 Gallus gallus ENSGALG00000013352 I 0.797
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.797
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.797
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.797
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.797
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.797
SF3B4 Homo sapiens ENSG00000143368 I 0.797
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.797
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.797
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.797
sf3b4 Danio rerio ENSDARG00000018574 D 0.797
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.797
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.797
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.797
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.797
Smp_067420 Schistosoma mansoni Smp_067420 D 0.762
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.776
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.776
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.706
Spx Drosophila melanogaster FBgn0015818 I 0.769
s_462942 Phytophthora sojae s_462942 N 0.727
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.741
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.811
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.909
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.769
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.776
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.769