FMR1 (Canis familiaris)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCAFG00000019085 T18481_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.808
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.746
FMR1
M305_0.6 		Homo sapiens Sequence logo not available KAGCGRCUGG SELEX
Cook et al.(2011)
471_15805463.1 		0.730
FMR1
M304_0.6 		Homo sapiens Sequence logo not available GGGCKAAGGARK SELEX
Cook et al.(2011)
471_15805463 		0.730
FMR1
M016_0.6 		Homo sapiens KGACARG RNAcompete
Ray et al.(2013)
RNCMPT00016 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000028162 KH 220 279
ENSCAFP00000028162 KH 283 334
ENSCAFP00000028164 KH 280 339
ENSCAFP00000028164 KH 343 411

Links

Other KH family RBPs
Other Canis familiaris RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL007449 Aedes aegypti AAEL007449 N 0.000
AGAP007802 Anopheles gambiae AGAP007802 N 0.000
BGIBMGA005589 Bombyx mori BGIBMGA005589 N 0.000
CpipJ_CPIJ010645 Culex pipiens CpipJ_CPIJ010645 N 0.000
CpipJ_CPIJ011735 Culex pipiens CpipJ_CPIJ011735 N 0.000
CPIJ010645 Culex quinquefasciatus CPIJ010645 N 0.000
CPIJ011735 Culex quinquefasciatus CPIJ011735 N 0.000
GF19039 Drosophila ananassae FBgn0096051 N 0.000