cassava25198.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava25198.valid.m1 T20662_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava25198.valid.m1 KH 144 214

Links

Other KH family RBPs
Other Manihot esculenta RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.813
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.821
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.821
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.827
BRADI1G04120 Brachypodium distachyon BRADI1G04120 N 0.722
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.714
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.741
PK22673.1 Cannabis sativa PK22673.1 N 0.840
PK23097.1 Cannabis sativa PK23097.1 N 0.944
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.893
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.892
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.787
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.838
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.893
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.807
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.787
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.917
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.759
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.907
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.907
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.725
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.842
MDP0000119110 Malus x domestica MDP0000119110 N 0.931
MDP0000665847 Malus x domestica MDP0000665847 N 0.932
MDP0000501473 Malus x domestica MDP0000501473 N 0.931
MDP0000186494 Malus x domestica MDP0000186494 N 0.932
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.958
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.803
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.931
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.842
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.747
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.840
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.931
mgf005196m Mimulus guttatus mgf005196m N 0.880
mgf011994m Mimulus guttatus mgf011994m N 0.806
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.728
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.792
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.819
LOC_Os07g12490 Oryza sativa LOC_Os07g12490 N 0.716
LOC_Os01g60260 Oryza sativa LOC_Os01g60260 N 0.716
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.865
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.933
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.812
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.789
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.845
ppa009701m Prunus persica ppa009701m N 0.907
29945.m000086 Ricinus communis 29945.m000086 N 0.817
27955.m000377 Ricinus communis 27955.m000377 N 0.946
SB02G006770 Sorghum bicolor Sb02g006770 N 0.833
SB01G003680 Sorghum bicolor Sb01g003680 N 0.822
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.764
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.958
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.806
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.808
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.847