CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAI69815
(
Xenopus laevis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
AAI69815
T22142_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.747
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.747
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.747
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.747
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI69815
KH
90
152
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQEAKMLL
AAI69815
KH
175
239
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIAGDPYKVQQAKEMV
AAI69815
KH
265
327
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERVAQITGPQDRCQHAAEIV
AAI69815
KH
366
431
EFNFVVPSVKTGLIIGKGGETIKNISQQSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLV
Links
Other
KH
family RBPs
Other
Xenopus laevis
RBPs
105 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.764
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.747
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.922
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.926
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.751
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.747
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.926
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.760
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.767
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.747
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.926
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.926
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.760
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.747
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.926
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.747
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.767
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.926
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.752
KHSRP
Danio rerio
ENSDARG00000026489
I
0.720
fubp1
Danio rerio
ENSDARG00000029248
I
0.868
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.744
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.743
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.926
FUBP1
Equus caballus
ENSECAG00000010867
I
0.926
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.729
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.747
FUBP3
Felis catus
ENSFCAG00000005113
N
0.756
KHSRP
Felis catus
ENSFCAG00000003731
I
0.747
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.767
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.915
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.865
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.716
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.717
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.747
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.764
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.930
FUBP3
Homo sapiens
ENSG00000107164
N
0.764
KHSRP
Homo sapiens
ENSG00000088247
D
0.747
FUBP1
Homo sapiens
ENSG00000162613
I
0.930
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.926
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.760
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.747
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.764
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.747
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.930
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.704
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.767
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.914
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.767
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.782
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.732
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.756
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.922
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.756
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.747
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.725
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.926
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.760
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.743
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.829
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.926
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.771
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.869
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.740
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.713
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.856
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.926
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.764
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.747
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.930
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.764
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.747
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.930
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.744
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.926
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.767
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.747
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.767
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.760
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.747
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.918
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.747
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.926
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.926
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.764
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.901
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.860
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.717
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.740
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.918
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.713
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.744
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.747
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.926
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.926
AAN77160
Xenopus laevis
AAN77160
I
0.728
AAI69923
Xenopus laevis
AAI69923
I
0.728
AAI61696
Xenopus laevis
AAI61696
I
0.735
AAH70981
Xenopus laevis
AAH70981
I
1.000
AAH60400
Xenopus laevis
AAH60400
N
0.771
AAH44277
Xenopus laevis
AAH44277
I
0.957
AAN77161
Xenopus laevis
AAN77161
I
0.973
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.981
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.767