B9HK27_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0008s00490 T24424_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s00490.1 PUF 624 657
POPTR_0008s00490.1 PUF 659 692
POPTR_0008s00490.1 PUF 695 728
POPTR_0008s00490.1 PUF 731 765
POPTR_0008s00490.1 PUF 767 801
POPTR_0008s00490.1 PUF 804 838
POPTR_0008s00490.1 PUF 840 874
POPTR_0008s00490.1 PUF 882 916
POPTR_0008s00490.2 PUF 665 698
POPTR_0008s00490.2 PUF 700 733
POPTR_0008s00490.2 PUF 736 769
POPTR_0008s00490.2 PUF 772 806
POPTR_0008s00490.2 PUF 808 842
POPTR_0008s00490.2 PUF 845 877

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.728
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.750
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.725
PK11972.1 Cannabis sativa PK11972.1 N 0.761
PK12245.1 Cannabis sativa PK12245.1 N 0.766
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.814
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.745
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.755
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.748
MDP0000313902 Malus x domestica MDP0000313902 N 0.793
MDP0000917770 Malus x domestica MDP0000917770 N 0.755
MDP0000319167 Malus x domestica MDP0000319167 N 0.705
MDP0000265231 Malus x domestica MDP0000265231 N 0.777
MDP0000277305 Malus x domestica MDP0000277305 N 0.829
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.755
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.854
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.719
mgf006786m Mimulus guttatus mgf006786m N 0.811
mgf002285m Mimulus guttatus mgf002285m N 0.706
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.762
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.762
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.700
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.708
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.748
ppa016404m Prunus persica ppa016404m N 0.825
ppa000898m Prunus persica ppa000898m N 0.777
30169.m006300 Ricinus communis 30169.m006300 N 0.850
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.705
SB03G039600 Sorghum bicolor Sb03g039600 N 0.705
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.751
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.794
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.808
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.750
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.758