Glyma15g17680.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma15g17680.1 T24896_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma15g17680.1 PUF 598 632
Glyma15g17680.1 PUF 634 668
Glyma15g17680.1 PUF 670 704
Glyma15g17680.1 PUF 706 740
Glyma15g17680.1 PUF 742 777
Glyma15g17680.1 PUF 779 813
Glyma15g17680.1 PUF 815 849
Glyma15g17680.1 PUF 860 891

Links

Other PUF family RBPs
Other Glycine max RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.705
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.709
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.708
PK12245.1 Cannabis sativa PK12245.1 N 0.843
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.764
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.885
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.971
MDP0000265231 Malus x domestica MDP0000265231 N 0.836
MDP0000313902 Malus x domestica MDP0000313902 N 0.751
MDP0000277305 Malus x domestica MDP0000277305 N 0.777
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.759
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.819
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.878
mgf002285m Mimulus guttatus mgf002285m N 0.781
mgf006786m Mimulus guttatus mgf006786m N 0.748
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.742
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.742
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.718
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.822
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.748
ppa000898m Prunus persica ppa000898m N 0.851
ppa016404m Prunus persica ppa016404m N 0.777
30169.m006300 Ricinus communis 30169.m006300 N 0.748
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.724
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.728
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.772
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.826
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.728
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.706