CpipJ_CPIJ016143 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ016143 T29005_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.829
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.746
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.746
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.746
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.746
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.746
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016143-RA RRM 29 100
CpipJ_CPIJ016143-RA RRM 116 184
CpipJ_CPIJ016143-RA RRM 258 328

Links

Other RRM family RBPs
Other Culex pipiens RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPOG_03832 Schizosaccharomyces cryophilus SPOG_03832 N 0.000
SOCG_01698 Schizosaccharomyces octosporus SOCG_01698 N 0.000
sap49 Schizosaccharomyces pombe SPAC31G5.01 N 0.000