CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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unc-75
(
Caenorhabditis elegans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
C17D12.2
T33331_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.758
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.720
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M079_0.6
RRM
31
100
LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMN
M079_0.6
RRM
126
194
LFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGAS
M079_0.6
RRM
431
501
LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
C17D12.2
RRM
31
100
LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMN
C17D12.2
RRM
126
194
LFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGAS
C17D12.2
RRM
431
501
LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Caenorhabditis elegans
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100408015
Callithrix jacchus
ENSCJAG00000001903
I
0.000
PCBP3
Homo sapiens
ENSG00000183570
I
0.000
ENSMGAG00000005386
Meleagris gallopavo
ENSMGAG00000005386
N
0.000
XR_030450.1
Monodelphis domestica
ENSMODG00000016543
N
0.000
ENSMODG00000017748
Monodelphis domestica
ENSMODG00000017748
I
0.000
PCBP2
Sus scrofa
ENSSSCG00000000274
I
0.000
PCBP1
Tarsius syrichta
ENSTSYG00000011282
N
0.000
PCBP1
Tupaia belangeri
ENSTBEG00000015706
N
0.000