CELF6 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000020985 T38097_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.976
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.825
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.736
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000016059 RRM 11 79
ENSLAFP00000016059 RRM 109 176
ENSLAFP00000016059 RRM 373 397
ENSLAFP00000016059 RRM 396 424
ENSLAFP00000024085 RRM 48 119
ENSLAFP00000024085 RRM 136 203
ENSLAFP00000024085 RRM 397 467

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HEXA Macaca mulatta ENSMMUG00000010687 I 0.981
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.981
BRUNOL6 Homo sapiens ENSG00000140488 D 0.976
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.976
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.976
CELF6 Bos taurus ENSBTAG00000014092 I 0.976
CELF6 Sus scrofa ENSSSCG00000001928 I 0.976
CELF6 Felis catus ENSFCAG00000016249 I 0.976
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.972
Celf6 Mus musculus ENSMUSG00000032297 I 0.972
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.972
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.972
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.967
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.882
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.863
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.840
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.830
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.830
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.830
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.825
BRUNOL5 Homo sapiens ENSG00000161082 D 0.825
Celf4 Mus musculus ENSMUSG00000024268 I 0.825
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.816
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.816
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.815
ACH69785 Xenopus laevis ACH69785 I 0.811
CELF4 Oryzias latipes ENSORLG00000008913 I 0.811
AAH57704 Xenopus laevis AAH57704 I 0.807
AAH72134 Xenopus laevis AAH72134 I 0.807
Q91579 Xenopus laevis Q91579 I 0.807
AAA81375 Xenopus laevis AAA81375 I 0.807
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.802
CELF3 Homo sapiens ENSG00000159409 I 0.802
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.802
CELF3 Equus caballus ENSECAG00000020365 I 0.802
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.802
CELF3 Canis familiaris ENSCAFG00000012794 I 0.802
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.802
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.802
Celf3 Mus musculus ENSMUSG00000028137 I 0.802
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.802
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.802
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.802
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.802
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.802
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.802
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.802
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.802
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.802
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.797
celf5 Danio rerio ENSDARG00000071375 I 0.797
CELF5 Oryzias latipes ENSORLG00000004600 I 0.797
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.797
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.797
AAH46942 Xenopus laevis AAH46942 I 0.797
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.791
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.788
CELF3 Sus scrofa ENSSSCG00000006618 I 0.783
celf3 Danio rerio ENSDARG00000034668 I 0.783
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.777
CELF3 Danio rerio ENSDARG00000006983 I 0.774
CELF3 Procavia capensis ENSPCAG00000001623 I 0.774
CELF3 Oryzias latipes ENSORLG00000010447 I 0.773
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.769
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.764
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.745
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.741
ACH69784 Xenopus laevis ACH69784 I 0.741
BRUNOL4 Homo sapiens ENSG00000101489 D 0.741
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.741
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.741
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.736
Bm1_27610 Brugia malayi Bm1_27610 I 0.736
CBG15358 Caenorhabditis briggsae CBG15358 I 0.722
CRE09771 Caenorhabditis remanei CRE09771 I 0.722
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.717
unc-75 Caenorhabditis elegans C17D12.2 D 0.712
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.712
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.703