CELF6 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000001928 T41395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.990
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.838
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.744
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000002106 RRM 9 78
ENSSSCP00000002106 RRM 97 164
ENSSSCP00000002106 RRM 358 428

Links

Other RRM family RBPs
Other Sus scrofa RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF6 Felis catus ENSFCAG00000016249 I 1.000
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 1.000
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 1.000
CELF6 Bos taurus ENSBTAG00000014092 I 1.000
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.995
HEXA Macaca mulatta ENSMMUG00000010687 I 0.995
BRUNOL6 Homo sapiens ENSG00000140488 D 0.990
Celf6 Mus musculus ENSMUSG00000032297 I 0.986
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.986
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.986
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.986
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.981
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.976
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.904
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.867
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.857
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.848
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.848
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.843
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.843
Celf4 Mus musculus ENSMUSG00000024268 I 0.843
BRUNOL5 Homo sapiens ENSG00000161082 D 0.838
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.838
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.838
CELF4 Oryzias latipes ENSORLG00000008913 I 0.829
AAH72134 Xenopus laevis AAH72134 I 0.824
AAA81375 Xenopus laevis AAA81375 I 0.824
ACH69785 Xenopus laevis ACH69785 I 0.824
AAH57704 Xenopus laevis AAH57704 I 0.824
Q91579 Xenopus laevis Q91579 I 0.824
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.819
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.819
CELF3 Equus caballus ENSECAG00000020365 I 0.819
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.819
CELF3 Homo sapiens ENSG00000159409 I 0.819
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.819
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.819
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.819
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.819
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.819
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.819
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.819
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.819
Celf3 Mus musculus ENSMUSG00000028137 I 0.819
CELF3 Canis familiaris ENSCAFG00000012794 I 0.819
AAH46942 Xenopus laevis AAH46942 I 0.814
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.814
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.814
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.814
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.814
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.814
CELF5 Oryzias latipes ENSORLG00000004600 I 0.810
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.810
celf5 Danio rerio ENSDARG00000071375 I 0.810
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.805
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.804
celf3 Danio rerio ENSDARG00000034668 I 0.800
CELF3 Sus scrofa ENSSSCG00000006618 I 0.800
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.794
CELF3 Oryzias latipes ENSORLG00000010447 I 0.794
CELF3 Procavia capensis ENSPCAG00000001623 I 0.790
CELF3 Danio rerio ENSDARG00000006983 I 0.786
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.782
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.777
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.754
Bm1_27610 Brugia malayi Bm1_27610 I 0.752
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.749
BRUNOL4 Homo sapiens ENSG00000101489 D 0.749
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.749
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.749
ACH69784 Xenopus laevis ACH69784 I 0.749
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.744
CBG15358 Caenorhabditis briggsae CBG15358 I 0.730
CRE09771 Caenorhabditis remanei CRE09771 I 0.730
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.729
unc-75 Caenorhabditis elegans C17D12.2 D 0.720
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.720
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.712
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.712
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.708
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.701