CELF3 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000006983 T36045_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.810
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.781
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.724
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000006351 RRM 9 77
ENSDARP00000006351 RRM 97 165
ENSDARP00000006351 RRM 349 419

Links

Other RRM family RBPs
Other Danio rerio RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.910
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.900
AAH72134 Xenopus laevis AAH72134 I 0.895
AAH57704 Xenopus laevis AAH57704 I 0.895
AAA81375 Xenopus laevis AAA81375 I 0.895
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.895
Q91579 Xenopus laevis Q91579 I 0.895
celf3 Danio rerio ENSDARG00000034668 I 0.895
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.886
AAH46942 Xenopus laevis AAH46942 I 0.886
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.886
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.871
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.871
Celf3 Mus musculus ENSMUSG00000028137 I 0.871
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.871
CELF3 Canis familiaris ENSCAFG00000012794 I 0.871
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.871
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.871
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.871
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.871
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.871
CELF3 Homo sapiens ENSG00000159409 I 0.871
CELF3 Equus caballus ENSECAG00000020365 I 0.871
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.871
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.871
CELF3 Oryzias latipes ENSORLG00000010447 I 0.858
CELF3 Sus scrofa ENSSSCG00000006618 I 0.857
CELF3 Procavia capensis ENSPCAG00000001623 I 0.852
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.843
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.824
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.824
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.824
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.819
CELF5 Oryzias latipes ENSORLG00000004600 I 0.819
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.819
celf5 Danio rerio ENSDARG00000071375 I 0.819
Celf4 Mus musculus ENSMUSG00000024268 I 0.819
BRUNOL5 Homo sapiens ENSG00000161082 D 0.810
ACH69785 Xenopus laevis ACH69785 I 0.805
CELF4 Oryzias latipes ENSORLG00000008913 I 0.800
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.795
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.786
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.786
CELF6 Sus scrofa ENSSSCG00000001928 I 0.786
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.786
CELF6 Bos taurus ENSBTAG00000014092 I 0.786
Celf6 Mus musculus ENSMUSG00000032297 I 0.786
CELF3 Oryzias latipes ENSORLG00000002630 I 0.786
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.786
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.786
CELF6 Felis catus ENSFCAG00000016249 I 0.786
HEXA Macaca mulatta ENSMMUG00000010687 I 0.781
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.781
BRUNOL6 Homo sapiens ENSG00000140488 D 0.781
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.781
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.776
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.776
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.776
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.775
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.774
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.767
Bm1_27610 Brugia malayi Bm1_27610 I 0.748
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.743
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.733
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.733
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.733
BRUNOL4 Homo sapiens ENSG00000101489 D 0.729
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.729
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.729
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.729
ACH69784 Xenopus laevis ACH69784 I 0.729
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.724
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.724
CBG15358 Caenorhabditis briggsae CBG15358 I 0.714
CRE09771 Caenorhabditis remanei CRE09771 I 0.714
unc-75 Caenorhabditis elegans C17D12.2 D 0.710
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.710
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.705
CELF3 Microcebus murinus ENSMICG00000010644 N 0.705
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.700
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.700