Q5ZLF9_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000009421 T37680_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.746
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.746
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.746
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.713
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000015326 RRM 6 65
ENSGALP00000015326 RRM 106 171
ENSGALP00000031981 RRM 6 68

Links

Other RRM family RBPs
Other Gallus gallus RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.000
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.729
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.000
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.969
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.783
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.977
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.705
AGAP004592 Anopheles gambiae AGAP004592 I 0.000
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.000
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.000
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.969
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.721
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.767
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.000
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.729
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.000
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 1.000
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.714
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.969
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.000
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.000
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.000
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.969
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.000
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.729
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.000
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.000
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.000
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.000
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.705
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.705
srsf5b Danio rerio ENSDARG00000027734 I 0.922
srsf6b Danio rerio ENSDARG00000016783 I 0.000
srsf6a Danio rerio ENSDARG00000013729 I 0.705
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.705
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.729
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
GF17608 Drosophila ananassae FBgn0094626 I 0.713
GG19772 Drosophila erecta FBgn0111973 N 0.000
GH18528 Drosophila grimshawi FBgn0125995 I 0.705
B52 Drosophila melanogaster FBgn0004587 D 0.713
GI22065 Drosophila mojavensis FBgn0144794 I 0.705
GL23543 Drosophila persimilis FBgn0161133 I 0.705
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.705
GM24118 Drosophila sechellia FBgn0178982 N 0.000
GD18917 Drosophila simulans FBgn0190428 N 0.000
GJ24113 Drosophila virilis FBgn0211197 I 0.705
GK13948 Drosophila willistoni FBgn0215954 I 0.713
GE26284 Drosophila yakuba FBgn0243315 N 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.961
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.000
LOC100053264 Equus caballus ENSECAG00000026873 I 0.969
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.729
SRSF5 Felis catus ENSFCAG00000008848 I 0.969
SRSF6 Gallus gallus ENSGALG00000000990 N 0.000
SFRS4 Gallus gallus ENSGALG00000001411 N 0.000
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.729
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.729
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.721
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.000
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.969
62194 Helobdella robusta 62194 I 0.705
SRSF5 Homo sapiens ENSG00000100650 D 0.969
SRSF4 Homo sapiens ENSG00000116350 I 0.729
ISCW014220 Ixodes scapularis ISCW014220 I 0.000
ISCW010322 Ixodes scapularis ISCW010322 I 0.000
ISCW010321 Ixodes scapularis ISCW010321 I 0.000
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.713
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.729
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.961
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.729
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.969
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.705
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.729
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.729
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.977
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.729
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.705
Srsf4 Mus musculus ENSMUSG00000028911 I 0.729
Srsf6 Mus musculus ENSMUSG00000016921 I 0.713
Srsf5 Mus musculus ENSMUSG00000021134 I 0.969
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.000
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.969
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.000
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.000
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.721
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.969
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.922
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.000
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.729
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.969
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.000
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.729
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.000
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.969
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.969
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.729
PHUM290500 Pediculus humanus PHUM290500 I 0.705
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.969
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.729
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.729
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.713
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.969
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.713
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.969
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.729
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.000
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.977
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.744
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.915
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.721
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.000
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.969
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.721
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.915
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.721
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.721
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.729
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.969
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.969
AAH44085 Xenopus laevis AAH44085 I 0.767
AAH44265 Xenopus laevis AAH44265 I 0.000
AAH71160 Xenopus laevis AAH71160 I 0.775
AAH46668 Xenopus laevis AAH46668 I 0.705
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.705
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.969
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.775