LjT28A08.70.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjT28A08.70.nc T57281_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LjT28A08.70.nc RRM 18 79

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.735
PK17691.1 Cannabis sativa PK17691.1 N 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.706
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.000
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.706
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.000
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.721
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.735
MDP0000548950 Malus x domestica MDP0000548950 I 0.735
MDP0000488395 Malus x domestica MDP0000488395 I 0.721
MDP0000134468 Malus x domestica MDP0000134468 I 0.000
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.721
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.706
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
ppa009964m Prunus persica ppa009964m I 0.000
ppa016222m Prunus persica ppa016222m I 0.721
ppa018603m Prunus persica ppa018603m I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.000
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.000