XM_002873527.1 (Arabidopsis lyrata)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pm.C_scaffold_6000986 T00708_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6000986 CCCH ZF 230 251
fgenesh1_pm.C_scaffold_6000986 RRM 366 426

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 1.000
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.788
30169.m006472 Ricinus communis 30169.m006472 N 0.776
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.771
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.771
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.767
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.767
30169.m006471 Ricinus communis 30169.m006471 N 0.759
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.759
PK18074.1 Cannabis sativa PK18074.1 N 0.753
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.747
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.747
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.744
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.738
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.738
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.738
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.736
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.736
ppa002413m Prunus persica ppa002413m N 0.735
ppa023263m Prunus persica ppa023263m N 0.735
MDP0000120231 Malus x domestica MDP0000120231 N 0.735
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.733
ppa002383m Prunus persica ppa002383m N 0.729
MDP0000164538 Malus x domestica MDP0000164538 N 0.729
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.726
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.723
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.723
MDP0000120462 Malus x domestica MDP0000120462 N 0.723
MDP0000243086 Malus x domestica MDP0000243086 N 0.723
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.723
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.723
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.723
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.723
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.723
SB01G036490 Sorghum bicolor Sb01g036490 N 0.723
mgf002273m Mimulus guttatus mgf002273m N 0.718
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.714
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.714
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.714
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.714
mgf000973m Mimulus guttatus mgf000973m N 0.714
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.713
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.711
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.711
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.711
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.711
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.711
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.711
SB02G043180 Sorghum bicolor Sb02g043180 N 0.711
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.711
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.711
MDP0000220601 Malus x domestica MDP0000220601 N 0.702
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.701
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.701