cassava34046.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava34046.m1 T00846_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava34046.m1 CCCH ZF 239 257
cassava34046.m1 RRM 369 429

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.859
30169.m006472 Ricinus communis 30169.m006472 N 0.835
PK18074.1 Cannabis sativa PK18074.1 N 0.824
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.807
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.805
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.793
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.793
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
ppa002383m Prunus persica ppa002383m N 0.788
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
mgf000973m Mimulus guttatus mgf000973m N 0.786
30169.m006471 Ricinus communis 30169.m006471 N 0.783
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.779
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.779
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.771
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.771
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.771
mgf002273m Mimulus guttatus mgf002273m N 0.765
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.762
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.762
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.759
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.759
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.759
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.759
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.759
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.759
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.750
SB08G001980 Sorghum bicolor Sb08g001980 N 0.750
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.747
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.747
SB01G036490 Sorghum bicolor Sb01g036490 N 0.747
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.747
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.747
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.747
ppa023263m Prunus persica ppa023263m N 0.747
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.747
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.747
MDP0000120231 Malus x domestica MDP0000120231 N 0.747
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.747
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.747
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.747
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.747
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.747
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.738
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.738
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.738
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.738
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.738
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.738
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.736
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.735
MDP0000243086 Malus x domestica MDP0000243086 N 0.735
SB02G043180 Sorghum bicolor Sb02g043180 N 0.735
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.735
MDP0000120462 Malus x domestica MDP0000120462 N 0.735
ppa002413m Prunus persica ppa002413m N 0.735
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.735
SB05G001540 Sorghum bicolor Sb05g001540 N 0.726
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.726
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.723
mgf014647m Mimulus guttatus mgf014647m N 0.714
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.711
MDP0000220601 Malus x domestica MDP0000220601 N 0.702