NCL (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000013061 T38053_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.830
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000010927 RRM 271 339
ENSLAFP00000010927 RRM 357 422
ENSLAFP00000010927 RRM 450 516
ENSLAFP00000010927 RRM 553 605

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.859
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.830
NCL Canis familiaris ENSCAFG00000011037 I 0.830
NCL Pan troglodytes ENSPTRG00000013025 I 0.830
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.830
NCL Gorilla gorilla ENSGGOG00000004300 I 0.830
NCL Bos taurus ENSBTAG00000016174 I 0.830
NCL Homo sapiens ENSG00000115053 D 0.830
NCL Macaca mulatta ENSMMUG00000018094 I 0.830
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.826
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.826
NCL Tarsius syrichta ENSTSYG00000004355 I 0.822
NCL Tursiops truncatus ENSTTRG00000009094 I 0.822
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.819
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.811
NCL Microcebus murinus ENSMICG00000002538 I 0.800
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.800
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.800
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.785
Ncl Mus musculus ENSMUSG00000026234 I 0.741
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.741
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.737
Ncl Dipodomys ordii ENSDORG00000012513 I 0.726
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.711
NCL Cavia porcellus ENSCPOG00000001034 I 0.707