Ncl (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000026234 T39275_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.885
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000027438 RRM 311 379
ENSMUSP00000027438 RRM 397 462
ENSMUSP00000027438 RRM 489 555
ENSMUSP00000027438 RRM 571 638

Links

Other RRM family RBPs
Other Mus musculus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.970
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.956
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.889
NCL Homo sapiens ENSG00000115053 D 0.885
NCL Bos taurus ENSBTAG00000016174 I 0.885
Ncl Dipodomys ordii ENSDORG00000012513 I 0.885
NCL Canis familiaris ENSCAFG00000011037 I 0.885
NCL Gorilla gorilla ENSGGOG00000004300 I 0.885
NCL Macaca mulatta ENSMMUG00000018094 I 0.885
NCL Pan troglodytes ENSPTRG00000013025 I 0.885
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.885
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.881
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.881
NCL Tursiops truncatus ENSTTRG00000009094 I 0.881
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.881
NCL Tarsius syrichta ENSTSYG00000004355 I 0.874
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.870
NCL Microcebus murinus ENSMICG00000002538 I 0.859
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.856
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.852
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.837
NCL Cavia porcellus ENSCPOG00000001034 I 0.793
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.789
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.778
NCL Vicugna pacos ENSVPAG00000001796 I 0.767
NCL Monodelphis domestica ENSMODG00000002470 I 0.764
NCL Macropus eugenii ENSMEUG00000012335 I 0.760
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.756
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.741
NCL Loxodonta africana ENSLAFG00000013061 I 0.741
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.726