NCL (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000001034 T35741_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000000932 RRM 250 318
ENSCPOP00000000932 RRM 336 401
ENSCPOP00000000932 RRM 429 495
ENSCPOP00000000932 RRM 515 564

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.874
NCL Canis familiaris ENSCAFG00000011037 I 0.856
NCL Pan troglodytes ENSPTRG00000013025 I 0.856
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.856
NCL Gorilla gorilla ENSGGOG00000004300 I 0.856
NCL Macaca mulatta ENSMMUG00000018094 I 0.856
NCL Homo sapiens ENSG00000115053 D 0.856
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.856
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.852
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.848
NCL Bos taurus ENSBTAG00000016174 I 0.848
NCL Tarsius syrichta ENSTSYG00000004355 I 0.844
NCL Tursiops truncatus ENSTTRG00000009094 I 0.844
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.833
NCL Microcebus murinus ENSMICG00000002538 I 0.830
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.811
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.807
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.800
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.796
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.796
Ncl Dipodomys ordii ENSDORG00000012513 I 0.796
Ncl Mus musculus ENSMUSG00000026234 I 0.793
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.752
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.748
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.716
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.715
NCL Macropus eugenii ENSMEUG00000012335 I 0.712
NCL Monodelphis domestica ENSMODG00000002470 I 0.712
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.711
NCL Loxodonta africana ENSLAFG00000013061 I 0.707
NCL Vicugna pacos ENSVPAG00000001796 I 0.704