LOC_Os04g42600 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os04g42600 T45021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g42600.1 RRM 41 111
LOC_Os04g42600.1 RRM 129 198
LOC_Os04g42600.1 RRM 220 289
LOC_Os04g42600.1 RRM 323 392
LOC_Os04g42600.2 RRM 41 111
LOC_Os04g42600.2 RRM 129 198
LOC_Os04g42600.2 RRM 220 289
LOC_Os04g42600.2 RRM 323 392

Links

Other RRM family RBPs
Other Oryza sativa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 1.000
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.886
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.875
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.861
SB06G021850 Sorghum bicolor Sb06g021850 N 0.861
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.769
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.762
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.758
ppa002607m Prunus persica ppa002607m N 0.754
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.754
MDP0000156895 Malus x domestica MDP0000156895 N 0.747
PK02172.1 Cannabis sativa PK02172.1 N 0.747
MDP0000253709 Malus x domestica MDP0000253709 N 0.747
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.747
29801.m003152 Ricinus communis 29801.m003152 N 0.747
ppa002618m Prunus persica ppa002618m N 0.744
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.744
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.744
ppa002620m Prunus persica ppa002620m N 0.744
MDP0000497543 Malus x domestica MDP0000497543 N 0.740
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.740
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.740
30170.m013847 Ricinus communis 30170.m013847 N 0.740
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.733
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.733
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.733
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.730
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.730
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.730
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.726
mgf004973m Mimulus guttatus mgf004973m N 0.719
mgf005294m Mimulus guttatus mgf005294m N 0.719
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.719
mgf009542m Mimulus guttatus mgf009542m N 0.719
MDP0000283985 Malus x domestica MDP0000283985 N 0.715
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.713
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.713
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.712
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.712
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.705
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.705
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.705