Sb02g017910 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb02g017910 T45925_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb02g017910.1 RRM 34 104
Sb02g017910.1 RRM 122 191
Sb02g017910.1 RRM 213 282
Sb02g017910.1 RRM 316 385
Sb02g017910.2 RRM 34 104
Sb02g017910.2 RRM 122 191
Sb02g017910.2 RRM 213 282
Sb02g017910.2 RRM 316 385

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.975
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.843
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.843
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.811
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.801
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.801
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.787
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.751
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.747
mgf009542m Mimulus guttatus mgf009542m N 0.744
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.740
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.740
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.740
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.737
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.733
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.730
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.726
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.726
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.726
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.726
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.726
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.726
mgf004973m Mimulus guttatus mgf004973m N 0.726
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.722
ppa002620m Prunus persica ppa002620m N 0.722
30170.m013847 Ricinus communis 30170.m013847 N 0.722
ppa002618m Prunus persica ppa002618m N 0.722
ppa002607m Prunus persica ppa002607m N 0.722
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.719
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.719
29801.m003152 Ricinus communis 29801.m003152 N 0.719
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.715
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.715
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.708
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.708
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.708
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.705
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.705
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.705
PK02172.1 Cannabis sativa PK02172.1 N 0.705
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.701
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.701
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.701