LOC_Os09g02700 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os09g02700 T45124_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g02700.1 RRM 42 112
LOC_Os09g02700.1 RRM 130 199
LOC_Os09g02700.1 RRM 221 290
LOC_Os09g02700.1 RRM 324 393

Links

Other RRM family RBPs
Other Oryza sativa RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 1.000
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.922
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.872
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.872
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.843
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.837
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.833
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.783
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.779
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.772
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.765
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.765
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.762
ppa002620m Prunus persica ppa002620m N 0.762
ppa002618m Prunus persica ppa002618m N 0.762
30170.m013847 Ricinus communis 30170.m013847 N 0.762
29801.m003152 Ricinus communis 29801.m003152 N 0.762
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.762
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.762
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.758
mgf009542m Mimulus guttatus mgf009542m N 0.758
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.754
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.754
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.754
ppa002607m Prunus persica ppa002607m N 0.754
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.751
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.744
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.744
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.744
PK02172.1 Cannabis sativa PK02172.1 N 0.740
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.740
MDP0000156895 Malus x domestica MDP0000156895 N 0.737
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.737
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.737
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.737
MDP0000253709 Malus x domestica MDP0000253709 N 0.737
MDP0000497543 Malus x domestica MDP0000497543 N 0.733
MDP0000283985 Malus x domestica MDP0000283985 N 0.733
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.733
PK00659.1 Cannabis sativa PK00659.1 N 0.730
mgf004973m Mimulus guttatus mgf004973m N 0.730
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.726
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.726
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.722
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.722
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.715
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.712
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.712
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.712
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.712
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.712
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.708
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.708
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.705
SB06G021850 Sorghum bicolor Sb06g021850 N 0.705
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.701
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.701