XM_002891485.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_104684.1 T46100_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104684.1 RRM 41 111
scaffold_104684.1 RRM 129 198
scaffold_104684.1 RRM 220 289
scaffold_104684.1 RRM 323 392

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.986
MDP0000253709 Malus x domestica MDP0000253709 N 0.790
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.790
MDP0000156895 Malus x domestica MDP0000156895 N 0.790
MDP0000497543 Malus x domestica MDP0000497543 N 0.786
ppa002607m Prunus persica ppa002607m N 0.786
PK02172.1 Cannabis sativa PK02172.1 N 0.783
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.783
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.779
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.776
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.776
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.776
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.772
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.772
29801.m003152 Ricinus communis 29801.m003152 N 0.772
PK00659.1 Cannabis sativa PK00659.1 N 0.769
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.769
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.765
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.758
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.754
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.754
30170.m013847 Ricinus communis 30170.m013847 N 0.754
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.754
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.747
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.744
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.744
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.740
mgf005294m Mimulus guttatus mgf005294m N 0.737
mgf009542m Mimulus guttatus mgf009542m N 0.733
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.733
MDP0000283985 Malus x domestica MDP0000283985 N 0.730
ppa002618m Prunus persica ppa002618m N 0.730
ppa002620m Prunus persica ppa002620m N 0.730
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.719
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.719
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.715
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.715
mgf004973m Mimulus guttatus mgf004973m N 0.715
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.712
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.706
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.706
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.705
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.705
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.705
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.705
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.701
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.701