GSPATP00004048001 (Paramecium tetraurelia)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSPATP00004048001 T56740_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSPATP00004048001 RRM 16 83

Links

Other RRM family RBPs
Other Paramecium tetraurelia RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.956
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.809
mgf016428m Mimulus guttatus mgf016428m N 0.797
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.797
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.797
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.797
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.797
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.797
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.797
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.794
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.794
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.794
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.794
29868.m000351 Ricinus communis 29868.m000351 N 0.794
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.794
ppa013405m Prunus persica ppa013405m N 0.794
ppa013407m Prunus persica ppa013407m N 0.794
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.794
PK21780.1 Cannabis sativa PK21780.1 N 0.794
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.794
MDP0000185506 Malus x domestica MDP0000185506 N 0.794
PITG_10282 Phytophthora infestans PITG_10282 N 0.783
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.783
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.783
s_454910 Phytophthora sojae s_454910 N 0.783
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.779
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.779
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.779
SB01G003790 Sorghum bicolor Sb01g003790 N 0.779
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.779
PHUM617060 Pediculus humanus PHUM617060 N 0.779
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.779
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.779
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.779
GF10910 Drosophila ananassae FBgn0087950 N 0.768
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.768
GG14070 Drosophila erecta FBgn0106332 N 0.768
GH16287 Drosophila grimshawi FBgn0123758 N 0.768
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.768
GE20495 Drosophila yakuba FBgn0068445 N 0.768
CG13298 Drosophila melanogaster FBgn0035692 N 0.768
GK17258 Drosophila willistoni FBgn0219257 N 0.768
GJ12004 Drosophila virilis FBgn0199256 N 0.768
GL22529 Drosophila persimilis FBgn0160121 N 0.768
GD13137 Drosophila simulans FBgn0184859 N 0.768
GI13232 Drosophila mojavensis FBgn0135989 N 0.768
GM13852 Drosophila sechellia FBgn0168783 N 0.768
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.768
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.768
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.765
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.765
MDP0000916880 Malus x domestica MDP0000916880 N 0.765
AAEL005909 Aedes aegypti AAEL005909 N 0.765
AGAP002780 Anopheles gambiae AGAP002780 N 0.765
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.765
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.765
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.765
TA13725 Theileria annulata TA13725 N 0.765
ISCW024082 Ixodes scapularis ISCW024082 N 0.750
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.750
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.750
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.750
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.750
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.750
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.750
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.750
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.750
LOAG_04189 Loa loa LOAG_04189 N 0.739
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
PVX_123875 Plasmodium vivax PVX_123875 N 0.735
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.735
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.735
PFL1200c Plasmodium falciparum PFL1200c N 0.735
EDO06533.1 Babesia bovis EDO06533.1 N 0.735
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.735
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.735
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.735
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.725
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.725
160.m00066 Tetrahymena thermophila 160.m00066 N 0.725
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.721
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.721
68671 Helobdella robusta 68671 N 0.721
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.721
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.721
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.721
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.721
sf3b14 Danio rerio ENSDARG00000009753 N 0.721
LOC100056247 Equus caballus ENSECAG00000015618 N 0.721
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.721
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.721
SF3B14 Gallus gallus ENSGALG00000016501 N 0.721
AC008073.5 Homo sapiens ENSG00000115128 N 0.721
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.721
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.721
AAH57709 Xenopus laevis AAH57709 N 0.721
TP02_0539 Theileria parva TP02_0539 N 0.721
Minc01156 Meloidogyne incognita Minc01156 N 0.721
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.721
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.721
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.721
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.721
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.721
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.721
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.721
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.721
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.721
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.721
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.721
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.721
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.721
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.721
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.721
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.721
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.721
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.721
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.721
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.721
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.721
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.710
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.706
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.706
PPA24922 Pristionchus pacificus PPA24922 N 0.706
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.706