gw1.84.45.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.84.45.1 T53390_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6		 Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M198_0.6 RRM 44 110
M198_0.6 RRM 129 199
M198_0.6 RRM 264 330

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.84.45.1 RRM 58 124
gw1.84.45.1 RRM 143 213
gw1.84.45.1 RRM 264 330

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.834
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.824
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.744
ppa006248m Prunus persica ppa006248m I 0.737
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.736
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.736
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.736
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.736
ppa006419m Prunus persica ppa006419m I 0.734
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.731
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.731
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.731
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.731
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.731
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.731
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.731
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.731
mgf001763m Mimulus guttatus mgf001763m I 0.729
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.729
MDP0000871411 Malus x domestica MDP0000871411 I 0.729
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.727
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.727
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.725
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.725
29739.m003726 Ricinus communis 29739.m003726 I 0.725
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.721
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.721
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.720
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.717
28226.m000878 Ricinus communis 28226.m000878 I 0.717
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.716
PK20770.1 Cannabis sativa PK20770.1 I 0.716
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.716
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.712
29727.m000492 Ricinus communis 29727.m000492 I 0.712
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.712
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.712
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.707
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.705
ppa006170m Prunus persica ppa006170m I 0.702
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.702
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.702
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.700
PK22818.1 Cannabis sativa PK22818.1 I 0.700