POPTR_0006s14150 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0006s14150 T45530_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s14150.1 RRM 46 112
POPTR_0006s14150.1 RRM 131 201
POPTR_0006s14150.1 RRM 251 317
POPTR_0006s14150.2 RRM 46 112
POPTR_0006s14150.2 RRM 131 201
POPTR_0006s14150.2 RRM 251 313
POPTR_0006s14150.3 RRM 46 112
POPTR_0006s14150.3 RRM 131 201
POPTR_0006s14150.3 RRM 251 317

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.932
29739.m003726 Ricinus communis 29739.m003726 I 0.922
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.912
MDP0000871411 Malus x domestica MDP0000871411 I 0.902
ppa006419m Prunus persica ppa006419m I 0.898
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.883
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.883
PK22818.1 Cannabis sativa PK22818.1 I 0.878
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.874
mgf001763m Mimulus guttatus mgf001763m I 0.873
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.869
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.869
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.869
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.869
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.864
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.864
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.864
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.864
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.864
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.864
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.864
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.864
29727.m000492 Ricinus communis 29727.m000492 I 0.859
mgf004534m Mimulus guttatus mgf004534m N 0.854
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.854
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.850
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.850
PK20770.1 Cannabis sativa PK20770.1 I 0.850
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.850
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.850
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.845
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.840
ppa006170m Prunus persica ppa006170m I 0.840
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.820
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.816
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.816
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.814
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.811
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.811
mgf015309m Mimulus guttatus mgf015309m N 0.807
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.795
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.795
MDP0000149711 Malus x domestica MDP0000149711 N 0.786
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.782
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.776
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.776
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.772
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.767
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.761
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.761
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.761
ppa006248m Prunus persica ppa006248m I 0.758
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.752
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.751
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.751
SB07G027050 Sorghum bicolor Sb07g027050 N 0.751
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.744
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.741
28226.m000878 Ricinus communis 28226.m000878 I 0.739
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.734
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.732
MDP0000147538 Malus x domestica MDP0000147538 N 0.730
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.720
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.720
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.720
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.700