BRADI3G40460 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI3G40460 T33254_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G40460.1 RRM 79 145
BRADI3G40460.1 RRM 164 234
BRADI3G40460.1 RRM 288 354

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.961
SB07G027050 Sorghum bicolor Sb07g027050 N 0.946
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.946
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.767
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.767
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.767
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.767
mgf001763m Mimulus guttatus mgf001763m I 0.761
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.761
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.757
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.757
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.757
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.757
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.757
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.757
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.757
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.757
ppa006248m Prunus persica ppa006248m I 0.754
29727.m000492 Ricinus communis 29727.m000492 I 0.752
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.748
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.748
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.748
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.748
PK20770.1 Cannabis sativa PK20770.1 I 0.743
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.743
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.743
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.743
ppa006170m Prunus persica ppa006170m I 0.743
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.741
MDP0000871411 Malus x domestica MDP0000871411 I 0.741
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.741
28226.m000878 Ricinus communis 28226.m000878 I 0.739
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.739
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.738
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.737
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.737
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.737
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.737
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.737
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.734
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.734
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.733
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.733
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.733
29739.m003726 Ricinus communis 29739.m003726 I 0.732
ppa006419m Prunus persica ppa006419m I 0.732
mgf015309m Mimulus guttatus mgf015309m N 0.729
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.728
mgf004534m Mimulus guttatus mgf004534m N 0.728
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.727
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.727
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.723
BGIOSIBCE028535 Oryza indica BGIOSIBCE028535 N 0.722
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.722
MDP0000149711 Malus x domestica MDP0000149711 N 0.718
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.717
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.715
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.710
PK22818.1 Cannabis sativa PK22818.1 I 0.707
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.704
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.700
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.700
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.700