PK20770.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK20770.1 T31735_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK20770.1 RRM 106 172
PK20770.1 RRM 191 261
PK20770.1 RRM 312 379

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.961
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.961
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.961
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.961
ppa006170m Prunus persica ppa006170m I 0.956
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.951
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.951
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.951
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.951
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.951
29727.m000492 Ricinus communis 29727.m000492 I 0.951
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.951
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.951
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.951
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.942
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.942
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.932
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.932
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.932
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.927
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.917
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.913
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.903
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.898
mgf015309m Mimulus guttatus mgf015309m N 0.894
MDP0000149711 Malus x domestica MDP0000149711 N 0.888
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.883
mgf004534m Mimulus guttatus mgf004534m N 0.883
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.874
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.874
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.874
MDP0000871411 Malus x domestica MDP0000871411 I 0.869
ppa006419m Prunus persica ppa006419m I 0.864
mgf001763m Mimulus guttatus mgf001763m I 0.854
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.850
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.850
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.845
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.845
29739.m003726 Ricinus communis 29739.m003726 I 0.835
MDP0000147538 Malus x domestica MDP0000147538 N 0.834
PK22818.1 Cannabis sativa PK22818.1 I 0.820
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.816
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.812
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.806
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.806
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.806
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.806
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.801
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.796
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.786
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.786
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.783
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.782
ppa006248m Prunus persica ppa006248m I 0.760
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.752
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.743
SB07G027050 Sorghum bicolor Sb07g027050 N 0.743
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.738
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.738
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.731
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.731
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.731
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.726
28226.m000878 Ricinus communis 28226.m000878 I 0.726
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.716
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.702