cassava19001.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava19001.valid.m1 T49161_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19001.valid.m1 RRM 46 112
cassava19001.valid.m1 RRM 131 201
cassava19001.valid.m1 RRM 251 317

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.922
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.912
ppa006419m Prunus persica ppa006419m I 0.907
29739.m003726 Ricinus communis 29739.m003726 I 0.902
MDP0000871411 Malus x domestica MDP0000871411 I 0.888
mgf001763m Mimulus guttatus mgf001763m I 0.878
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.878
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.878
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.869
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.869
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.869
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.869
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.864
PK22818.1 Cannabis sativa PK22818.1 I 0.863
29727.m000492 Ricinus communis 29727.m000492 I 0.859
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.854
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.854
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.854
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.854
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.854
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.854
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.854
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.854
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.854
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.850
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.845
PK20770.1 Cannabis sativa PK20770.1 I 0.845
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.845
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.840
ppa006170m Prunus persica ppa006170m I 0.840
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.840
mgf004534m Mimulus guttatus mgf004534m N 0.830
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.820
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.820
mgf015309m Mimulus guttatus mgf015309m N 0.816
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.815
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.814
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.811
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.811
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.811
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.806
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.795
MDP0000149711 Malus x domestica MDP0000149711 N 0.791
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.786
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.762
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.761
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.761
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.757
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.752
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.746
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.746
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.746
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.746
ppa006248m Prunus persica ppa006248m I 0.744
MDP0000147538 Malus x domestica MDP0000147538 N 0.735
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.734
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.729
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.727
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.727
28226.m000878 Ricinus communis 28226.m000878 I 0.725
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.725
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.725
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.722
SB07G027050 Sorghum bicolor Sb07g027050 N 0.722
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.715
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.715