Glyma07g04640.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma07g04640.1 T52693_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma07g04640.1 RRM 59 125
Glyma07g04640.1 RRM 144 214
Glyma07g04640.1 RRM 265 332

Links

Other RRM family RBPs
Other Glycine max RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.956
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.947
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.947
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.947
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.947
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.942
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.942
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.942
PK20770.1 Cannabis sativa PK20770.1 I 0.942
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.942
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.942
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.942
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.942
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.942
29727.m000492 Ricinus communis 29727.m000492 I 0.937
ppa006170m Prunus persica ppa006170m I 0.932
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.932
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.932
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.932
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.927
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.903
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.898
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.888
mgf004534m Mimulus guttatus mgf004534m N 0.888
mgf015309m Mimulus guttatus mgf015309m N 0.884
MDP0000871411 Malus x domestica MDP0000871411 I 0.879
ppa006419m Prunus persica ppa006419m I 0.879
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.874
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.874
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.869
mgf001763m Mimulus guttatus mgf001763m I 0.869
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.864
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.864
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.864
MDP0000149711 Malus x domestica MDP0000149711 N 0.864
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.859
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.854
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.850
29739.m003726 Ricinus communis 29739.m003726 I 0.845
PK22818.1 Cannabis sativa PK22818.1 I 0.845
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.816
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.812
MDP0000147538 Malus x domestica MDP0000147538 N 0.810
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.801
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.796
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.796
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.796
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.786
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.777
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.777
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.773
ppa006248m Prunus persica ppa006248m I 0.769
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.762
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.762
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.745
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.743
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.743
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.740
28226.m000878 Ricinus communis 28226.m000878 I 0.740
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.740
SB07G027050 Sorghum bicolor Sb07g027050 N 0.733
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.733
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.733
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.721
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.721
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.702
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.702