XM_002892901.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_101937.1 T46096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_101937.1 RRM 56 122
scaffold_101937.1 RRM 141 211
scaffold_101937.1 RRM 262 329

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.981
PK20770.1 Cannabis sativa PK20770.1 I 0.903
29727.m000492 Ricinus communis 29727.m000492 I 0.903
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.898
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.898
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.898
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.898
ppa006170m Prunus persica ppa006170m I 0.893
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.893
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.888
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.888
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.888
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.888
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.888
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.888
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.888
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.888
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.888
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.879
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.879
mgf004534m Mimulus guttatus mgf004534m N 0.879
mgf015309m Mimulus guttatus mgf015309m N 0.874
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.869
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.869
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.869
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.864
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.864
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.854
mgf001763m Mimulus guttatus mgf001763m I 0.845
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.840
MDP0000149711 Malus x domestica MDP0000149711 N 0.840
MDP0000871411 Malus x domestica MDP0000871411 I 0.830
ppa006419m Prunus persica ppa006419m I 0.825
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.816
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.816
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.811
29739.m003726 Ricinus communis 29739.m003726 I 0.811
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.811
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.806
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.801
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.801
MDP0000147538 Malus x domestica MDP0000147538 N 0.791
PK22818.1 Cannabis sativa PK22818.1 I 0.782
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.777
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.772
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.767
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.764
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.762
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.762
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.752
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.752
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.743
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.739
SB07G027050 Sorghum bicolor Sb07g027050 N 0.738
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.733
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.733
ppa006248m Prunus persica ppa006248m I 0.731
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.729
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.707
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.707
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.704
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.702