28226.m000878 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 28226.m000878 T48630_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
28226.m000878 RRM 41 107
28226.m000878 RRM 126 196
28226.m000878 RRM 247 313

Links

Other RRM family RBPs
Other Ricinus communis RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006248m Prunus persica ppa006248m I 0.898
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.898
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.878
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.873
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.863
MDP0000201427 Malus x domestica MDP0000201427 N 0.771
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.758
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.755
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.755
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.755
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.755
MDP0000871411 Malus x domestica MDP0000871411 I 0.754
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.754
ppa006419m Prunus persica ppa006419m I 0.749
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.745
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.745
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.745
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.745
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.745
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.745
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.745
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.745
PK22818.1 Cannabis sativa PK22818.1 I 0.744
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.740
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.739
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.739
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.739
29727.m000492 Ricinus communis 29727.m000492 I 0.736
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.734
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.731
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.731
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.731
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.731
SB07G027050 Sorghum bicolor Sb07g027050 N 0.729
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.729
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.729
PK20770.1 Cannabis sativa PK20770.1 I 0.726
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.726
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.725
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.725
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.725
mgf001763m Mimulus guttatus mgf001763m I 0.725
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.725
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.720
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.717
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.716
ppa006170m Prunus persica ppa006170m I 0.716
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.712
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.712
mgf015309m Mimulus guttatus mgf015309m N 0.708
29739.m003726 Ricinus communis 29739.m003726 I 0.705
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.705
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.705
mgf004534m Mimulus guttatus mgf004534m N 0.702
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.702