MDP0000871411 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000871411 T57734_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000871411 RRM 48 114
MDP0000871411 RRM 133 203
MDP0000871411 RRM 254 320

Links

Other RRM family RBPs
Other Malus x domestica RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006419m Prunus persica ppa006419m I 0.956
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.937
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.902
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.893
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.893
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.893
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.893
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.893
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.893
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.893
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.893
mgf001763m Mimulus guttatus mgf001763m I 0.893
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.888
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.888
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.888
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.888
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.888
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.879
PK22818.1 Cannabis sativa PK22818.1 I 0.878
29739.m003726 Ricinus communis 29739.m003726 I 0.878
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.873
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.869
29727.m000492 Ricinus communis 29727.m000492 I 0.869
PK20770.1 Cannabis sativa PK20770.1 I 0.869
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.869
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.868
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.864
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.859
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.859
ppa006170m Prunus persica ppa006170m I 0.854
mgf004534m Mimulus guttatus mgf004534m N 0.850
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.850
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.850
mgf015309m Mimulus guttatus mgf015309m N 0.836
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.831
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.830
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.829
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.825
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.820
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.820
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.815
MDP0000149711 Malus x domestica MDP0000149711 N 0.806
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.800
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.796
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.786
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.785
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.785
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.782
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.776
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.771
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.771
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.767
ppa006248m Prunus persica ppa006248m I 0.763
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.763
MDP0000147538 Malus x domestica MDP0000147538 N 0.758
28226.m000878 Ricinus communis 28226.m000878 I 0.754
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.751
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.744
SB07G027050 Sorghum bicolor Sb07g027050 N 0.741
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.741
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.741
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.741
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.739
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.729
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.729
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.725
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.720