Medtr3g133100 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g133100 T54490_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g133100.1 RRM 62 128
Medtr3g133100.1 RRM 147 217
Medtr3g133100.1 RRM 269 335
Medtr3g133100.2 RRM 46 112
Medtr3g133100.2 RRM 131 201
Medtr3g133100.2 RRM 253 319

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.951
ppa006248m Prunus persica ppa006248m I 0.902
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.883
28226.m000878 Ricinus communis 28226.m000878 I 0.863
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.849
MDP0000201427 Malus x domestica MDP0000201427 N 0.776
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.740
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.740
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.740
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.740
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.734
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.729
PK20770.1 Cannabis sativa PK20770.1 I 0.726
PK22818.1 Cannabis sativa PK22818.1 I 0.725
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.725
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.721
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.721
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.721
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.721
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.721
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.721
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.721
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.721
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.721
29727.m000492 Ricinus communis 29727.m000492 I 0.721
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.721
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.721
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.720
ppa006419m Prunus persica ppa006419m I 0.720
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.720
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.720
MDP0000871411 Malus x domestica MDP0000871411 I 0.720
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.720
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.720
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.720
mgf015309m Mimulus guttatus mgf015309m N 0.718
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.717
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.716
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.716
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.716
mgf001763m Mimulus guttatus mgf001763m I 0.715
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.715
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.715
SB07G027050 Sorghum bicolor Sb07g027050 N 0.715
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.715
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.712
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.712
ppa006170m Prunus persica ppa006170m I 0.707
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.707
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.705
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.702
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.700