cassava129.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava129.valid.m1 T49122_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava129.valid.m1 RRM 55 121
cassava129.valid.m1 RRM 140 210
cassava129.valid.m1 RRM 261 328

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 1.000
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 1.000
cassava2734.m1 Manihot esculenta cassava2734.m1 I 1.000
cassava2735.m1 Manihot esculenta cassava2735.m1 I 1.000
cassava2733.m1 Manihot esculenta cassava2733.m1 I 1.000
cassava2732.m1 Manihot esculenta cassava2732.m1 I 1.000
cassava2731.m1 Manihot esculenta cassava2731.m1 I 1.000
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.971
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.971
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.971
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.971
29727.m000492 Ricinus communis 29727.m000492 I 0.966
PK20770.1 Cannabis sativa PK20770.1 I 0.951
ppa006170m Prunus persica ppa006170m I 0.947
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.947
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.942
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.942
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.937
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.932
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.927
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.927
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.922
mgf015309m Mimulus guttatus mgf015309m N 0.903
mgf004534m Mimulus guttatus mgf004534m N 0.903
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.898
MDP0000871411 Malus x domestica MDP0000871411 I 0.893
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.888
MDP0000149711 Malus x domestica MDP0000149711 N 0.883
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.883
ppa006419m Prunus persica ppa006419m I 0.879
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.879
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.869
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.869
mgf001763m Mimulus guttatus mgf001763m I 0.869
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.864
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.854
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.850
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.845
29739.m003726 Ricinus communis 29739.m003726 I 0.835
MDP0000147538 Malus x domestica MDP0000147538 N 0.829
PK22818.1 Cannabis sativa PK22818.1 I 0.825
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.820
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.816
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.808
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.806
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.806
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.801
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.801
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.796
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.787
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.783
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.782
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.782
ppa006248m Prunus persica ppa006248m I 0.764
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.757
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.752
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.750
SB07G027050 Sorghum bicolor Sb07g027050 N 0.748
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.745
28226.m000878 Ricinus communis 28226.m000878 I 0.745
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.743
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.743
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.740
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.731
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.721
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.716
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.712